Emmanouil Sifakis

Publications

• Elucidating the identity of resistance mechanisms to prednisolone exposure in acute lymphoblastic leukemia cells through transcriptomic analysis: A computational approach
• The ultra-sensitive Nodewalk technique identifies stochastic from virtual, population-based enhancer hubs regulating MYC in 3D: Implications for the fitness of cancer cells
• PARP1- and CTCF-Mediated Interactions between Active and Repressed Chromatin at the Lamina Promote Oscillating Transcription.
• STAT3 Activity Promotes Programmed-Death Ligand 1 Expression and Suppresses Immune Responses in Breast Cancer
• Programmed death‐ligand 1 gene expression is a prognostic marker in early breast cancer and provides additional prognostic value to 21‐gene and 70‐gene signatures in estrogen receptor‐positive disease
• Correlation Between Contrast-enhanced Ultrasound Characteristics (Qualitative and Quantitative) and Pathological Prognostic Factors in Breast Cancer.
• MYC as a driver of stochastic chromatin networks: implications for the fitness of cancer cells
• PD-1 protein and gene expression as prognostic factors in early breast cancer
• Analysis of DNA methylation epidemiological data through a generic composite statistical framework
• Microarrays
• SETTING A RATIONAL FRAMEWORK FOR EXPERIMENTAL DESIGN AND ANALYSIS OF HIGH-THROUGHPUT DNA MICROARRAY EXPERIMENTS AND DATA
• Identifying gender independent biomarkers responsible for human muscle aging using microarray data
• Setting a rational framework for experimental design and analysis of high-throughput dna microarray experiments and data
• WNT signaling and AHCTF1 promote oncogenic MYC expression through super-enhancer-mediated gene gating
• Author Correction: WNT signaling and AHCTF1 promote oncogenic MYC expression through super-enhancer-mediated gene gating
• Robust carotid artery recognition in longitudinal B-mode ultrasound images
• A composite framework for the statistical analysis of epidemiological DNA methylation data with the Infinium Human Methylation 450K BeadChip
• Evaluating the effect of various background correction methods regarding noise reduction, in two-channel microarray data
• Using the hough transform to segment ultrasound images of longitudinal and transverse sections of the carotid artery
• cDNA microarray analysis of a glucocorticoid treated acute lymphoblastic leukemia cell line
• Derivation of Cancer Related Biomarkers from DNA Methylation Data from an Epidemiological Cohort
• Comparative computational methods for identification of inherent or acquired mechanisms of resistance to prednisolone in Acute Lymphoblastic Leukemia cells
• The long-term prognostic and predictive capacity of cyclin D1 gene amplification in 2305 breast tumours
• Correlation between contrast-enhanced ultrasound characteristics (qualitative and quantitative) and pathological prognostic factors in breast cancer