ARCHIVE
Lten_pop06_Pi.bed.zip (54.82 kB)
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Lten_pop08_Pi.bed.zip (57.1 kB)
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Lten_pop17_Pi.bed.zip (57.11 kB)
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Lten_pop21_Pi.bed.zip (56.92 kB)
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Lten_pop23_Pi.bed.zip (56.75 kB)
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Lten_pop26_Pi.bed.zip (56.56 kB)
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Lten_pop32_Pi.bed.zip (55.81 kB)
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Lten_pop34_Pi.bed.zip (56.35 kB)
TEXT
README_pi.txt (0.82 kB)
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MANIFEST_pi.txt (0.28 kB)
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Linum tenue - PI estimates per population
dataset
posted on 2024-09-05, 07:23 authored by Zoe PostelZoe Postel, Marco FracassettiMarco Fracassetti, Tanja SlotteTanja Slotte, Juanita Gutiérrez-Valencia, Panagiotis-Ioannis Zervakis, Ignas Bunikis, Lucile Soler, Aleksandra Losvik, Aurelie Desamore, P. William HughesP. William Hughes, Sara Mehrabi, Benjamin LaenenBenjamin Laenen, Olga Vinnere Pettersson, Mohammed AbdelazizWhole genome pi estimates for individuals of all population of L. tenue per 100 kb windows.
It is part of this article: Gutiérrez-Valencia, J., Zervakis, P. I., Postel, Z., Fracassetti, M., Losvik, A., Mehrabi, S., ... & Slotte, T. (2024). Genetic causes and genomic consequences of breakdown of distyly in Linum trigynum. Molecular Biology and Evolution, msae087. https://doi.org/10.1093/molbev/msae087
Estimations were done using vcftools v.0.1.16 on a filtered vcf file.
File's descriptions:
- CHROM = the chromosome's name
- START = the start position of the 100 kb window
- END = the end position of the 100 kb window
- PI = the estimated value of pi for that window
List of the populations:
- population 06
- population 08
- population 17
- population 21
- population 23
- population 26
- population 32
- population 34
Funding
The role of structural variation for the origin and evolution of a classic supergene
Swedish Research Council
Find out more...Supergene evolution in a classic plant system - bringing the study of distyly into the genomic era
European Research Council
Find out more...History
Publisher
Stockholm UniversityContact email
zoe.postel@su.seSciLifeLab acknowledgement
- Bioinformatics platform (NBIS)
