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<i>Linum tenue </i>- PI estimates per population

Version 2 2024-10-30, 15:36
Version 1 2024-09-05, 07:23
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posted on 2024-10-30, 15:36 authored by Zoe PostelZoe Postel, Marco FracassettiMarco Fracassetti, Tanja SlotteTanja Slotte, Juanita Gutiérrez-Valencia, Panagiotis-Ioannis Zervakis, Ignas Bunikis, Lucile Soler, Aleksandra Losvik, Aurelie Desamore, P. William HughesP. William Hughes, Sara Mehrabi, Benjamin LaenenBenjamin Laenen, Olga Vinnere Pettersson, Mohammed Abdelaziz
<p dir="ltr">Whole genome pi estimates for individuals of all population of <i>L. tenue</i> per 100 kb windows.</p><p dir="ltr">It is part of this article: Gutiérrez-Valencia, J., Zervakis, P. I., Postel, Z., Fracassetti, M., Losvik, A., Mehrabi, S., ... & Slotte, T. (2024). Genetic causes and genomic consequences of breakdown of distyly in Linum trigynum. Molecular Biology and Evolution, msae087. https://doi.org/10.1093/molbev/msae087</p><p dir="ltr">Estimations were done using vcftools v.0.1.16 on a filtered vcf file.</p><p dir="ltr"><u>File's descriptions</u>:</p><ul><li>CHROM = the chromosome's name</li><li>START = the start position of the 100 kb window</li><li>END = the end position of the 100 kb window</li><li>PI = the estimated value of pi for that window</li></ul><p dir="ltr"><u>List of the populations:</u></p><ul><li>population 06</li><li>population 08</li><li>population 17</li><li>population 21</li><li>population 23</li><li>population 26</li><li>population 32</li><li>population 34</li></ul><p></p>

Funding

The role of structural variation for the origin and evolution of a classic supergene

Swedish Research Council

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Supergene evolution in a classic plant system - bringing the study of distyly into the genomic era

European Research Council

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History

Publisher

Stockholm University

Contact email

zoe.postel@su.se

SciLifeLab acknowledgement

  • Bioinformatics platform (NBIS)

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    Tanja Slotte research group

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