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Gene annotation of <i>Linum trigynum</i>

Version 2 2024-08-29, 15:22
Version 1 2024-05-13, 08:32
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posted on 2024-08-29, 15:22 authored by Marco FracassettiMarco Fracassetti, Tanja SlotteTanja Slotte, Juanita Gutierrez-Valencia, Panagiotis-Ioannis Zervakis, Zoé Postel, Ignas Bunikis, Lucile Soler, Aleksandra Losvik, Aurelie Desamore, P. William HughesP. William Hughes, Sara Mehrabi, Benjamin LaenenBenjamin Laenen, Mohamed Abdelaziz, Olga Vinnere Pettersson, Juan Arroyo
<p dir="ltr">The file contains the genes annotation of <i>Linum trigynum</i> genome. </p><p dir="ltr">The genome has been deposited to [ENA](https://www.ebi.ac.uk/ena/browser/home) with the accession id: GCA_964030455 (project PRJEB67577). </p><p dir="ltr">The genes annotation has been done with [TSEBRA](https://github.com/Gaius-Augustus/TSEBRA). The genes contained in the S-locus region has been manually annotated using [StringTie](https://ccb.jhu.edu/software/stringtie/) and [TransDecoder](https://github.com/TransDecoder/). The conversion from gtf to gff3 has been done with [AGAT](https://agat.readthedocs.io/en/latest/index.html). </p><p dir="ltr">It is part of this article: Gutiérrez-Valencia, J., Zervakis, P. I., Postel, Z., Fracassetti, M., Losvik, A., Mehrabi, S., ... & Slotte, T. (2024). Genetic causes and genomic consequences of breakdown of distyly in Linum trigynum. Molecular Biology and Evolution, msae087. https://doi.org/10.1093/molbev/msae087</p>

Funding

Supergene evolution in a classic plant system - bringing the study of distyly into the genomic era

European Research Council

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The role of structural variation for the origin and evolution of a classic supergene

Swedish Research Council

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Stockholm University

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  • Bioinformatics platform (NBIS)
  • National Genomics Infrastructure unit

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