Gene annotation of Linum trigynum

Version 2 2024-08-29, 15:22

Version 1 2024-05-13, 08:32

dataset

posted on 2024-08-29, 15:22 authored by Marco FracassettiMarco Fracassetti, Tanja SlotteTanja Slotte, Juanita Gutierrez-Valencia, Panagiotis-Ioannis Zervakis, Zoé Postel, Ignas Bunikis, Lucile Soler, Aleksandra Losvik, Aurelie Desamore, P. William HughesP. William Hughes, Sara Mehrabi, Benjamin LaenenBenjamin Laenen, Mohamed Abdelaziz, Olga Vinnere Pettersson, Juan Arroyo

The file contains the genes annotation of Linum trigynum genome.

The genome has been deposited to [ENA](https://www.ebi.ac.uk/ena/browser/home) with the accession id: GCA_964030455 (project PRJEB67577).

The genes annotation has been done with [TSEBRA](https://github.com/Gaius-Augustus/TSEBRA). The genes contained in the S-locus region has been manually annotated using [StringTie](https://ccb.jhu.edu/software/stringtie/) and [TransDecoder](https://github.com/TransDecoder/). The conversion from gtf to gff3 has been done with [AGAT](https://agat.readthedocs.io/en/latest/index.html).

It is part of this article: Gutiérrez-Valencia, J., Zervakis, P. I., Postel, Z., Fracassetti, M., Losvik, A., Mehrabi, S., ... & Slotte, T. (2024). Genetic causes and genomic consequences of breakdown of distyly in Linum trigynum. Molecular Biology and Evolution, msae087. https://doi.org/10.1093/molbev/msae087