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Nathaniel Street

Publications

  • Identification of new growth regulators using cross-species network analysis in plants
  • Transcriptome analysis of embryonic domains in Norway spruce reveals potential regulators of suspensor cell death.
  • Effects of Early, Small-Scale Nitrogen Addition on Germination and Early Growth of Scots Pine (Pinus sylvestris) Seedlings and on the Recruitment of the Root-Associated Fungal Community
  • The BOP‐type co‐transcriptional regulator NODULE ROOT1 promotes stem secondary growth of the tropical Cannabaceae tree Parasponia andersonii
  • Transcriptional roadmap to seasonal variation in wood formation of Norway spruce.
  • Norway spruce deploys tissue specific canonical responses to acclimate to cold
  • Genomics of forest trees
  • Why does nitrogen addition to forest soils inhibit decomposition?
  • Poplar carbohydrate-active enzymes: whole-genome annotation and functional analyses based on RNA expression data
  • Cyberinfrastructure to Improve Forest Health and Productivity: The Role of Tree Databases in Connecting Genomes, Phenomes, and the Environment
  • Systems and Synthetic Biology of Forest Trees: A Bioengineering Paradigm for Woody Biomass Feedstocks
  • Functional and evolutionary genomic inferences in Populus through genome and population sequencing of American and European aspen
  • Integrative Analysis of Three RNA Sequencing Methods Identifies Mutually Exclusive Exons of MADS-Box Isoforms During Early Bud Development in Picea abies
  • Adaptive introgression and standing genetic variation, two facilitators of adaptation to high latitudes in European aspen (Populus tremula L.)
  • A single gene underlies the dynamic evolution of poplar sex determination
  • Evidence for widespread selection in shaping the genomic landscape during speciation of Populus
  • Molecular basis of differential adventitious rooting competence in poplar genotypes
  • Adaptive Introgression Facilitates Adaptation to High Latitudes in European Aspen (Populus Tremula L.) (vol 38, pg 5034, 2021)
  • Demographic History and Natural Selection Shape Patterns of Deleterious Mutation Load and Barriers to Introgression across Populus Genome
  • Centromere-Specific Retrotransposons and Very-Long-Chain Fatty Acid Biosynthesis in the Genome of Yellowhorn (Xanthoceras sorbifolium, Sapindaceae), an Oil-Producing Tree With Significant Drought Resistance
  • qtlXplorer: an online systems genetics browser in the Eucalyptus Genome Integrative Explorer (EucGenIE)
  • Adaptive Introgression Facilitates Adaptation to High Latitudes in European Aspen (Populus tremula L.)
  • HIGH SPATIAL RESOLUTION PROFILING IN TREE SPECIES
  • Chromosome-level genome assembly of a parent species of widely cultivated azaleas
  • Microbial community response to growing season and plant nutrient optimisation in a boreal Norway spruce forest
  • Designing Usable Bioinformatics Tools for Specialized Users
  • AspWood: High-Spatial-Resolution Transcriptome Profiles Reveal Uncharacterized Modularity of Wood Formation in Populus tremula
  • Norway spruce deploys tissue-specific responses during acclimation to cold
  • Metatranscriptomics captures dynamic shifts in mycorrhizal coordination in boreal forests
  • The Mitogenome of Norway Spruce and a Reappraisal of Mitochondrial Recombination in Plants.
  • A major locus controls local adaptation and adaptive life history variation in a perennial plant
  • Downregulating aspen xylan biosynthetic GT43 genes in developing wood stimulates growth via reprograming of the transcriptome
  • Seiðr: Efficient calculation of robust ensemble gene networks
  • Identification of growth regulators using cross-species network analysis in plants
  • Cone‐setting in spruce is regulated by conserved elements of the age‐dependent flowering pathway
  • Gene co-expression network connectivity is an important determinant of selective constraint
  • A Key Role for Apoplastic H2O2 in Norway Spruce Phenolic Metabolism
  • Seiðr: Efficient Calculation of Robust Ensemble Gene Networks
  • An ultra-dense haploid genetic map for evaluating the highly fragmented genome assembly of Norway spruce (Picea abies)
  • Storage lipid accumulation is controlled by photoperiodic signal acting via regulators of growth cessation and dormancy in hybrid aspen
  • An Ultra-Dense Haploid Genetic Map for Evaluating the Highly Fragmented Genome Assembly of Norway Spruce (Picea abies)
  • Constructing a high-density linkage map to infer the genomic landscape of recombination rate variation in European Aspen (Populus tremula)
  • An Improved Genome Assembly of the European Aspen Populus tremula
  • GenIE-Sys: Genome Integrative Explorer System
  • Ray Parenchymal Cells Contribute to Lignification of Tracheids in Developing Xylem of Norway Spruce
  • Inferring the Genomic Landscape of Recombination Rate Variation in European Aspen (Populus tremula)
  • A metabolite roadmap of the wood‐forming tissue in Populus tremula
  • Leaf shape in Populus tremula is a complex, omnigenic trait
  • Candidate regulators and target genes of drought stress in needles and roots of Norway spruce
  • Comparative Fungal Community Analyses Using Metatranscriptomics and Internal Transcribed Spacer Amplicon Sequencing from Norway Spruce
  • Gene co-expression network connectivity is an important determinant of selective constraint
  • Cytokinin and Auxin Display Distinct but Interconnected Distribution and Signaling Profiles to Stimulate Cambial Activity
  • BatchMap: A parallel implementation of the OneMap R package for fast computation of F-1 linkage maps in outcrossing species
  • Towards integration of population and comparative genomics in forest trees.
  • The Norway spruce genome sequence and conifer genome evolution
  • Comparative physiology of allopatric Populus species: geographic clines in photosynthesis, height growth, and carbon isotope discrimination in common gardens
  • Serendipitous Meta-Transcriptomics: The Fungal Community of Norway Spruce (Picea abies)
  • Populus tremula (European aspen) shows no evidence of sexual dimorphism
  • Leaf growth and development of Populus - Is cell expansion or cell production most important?
  • A genomics and quantitative genetics approach to understanding ozone sensitivity in Poplar
  • Populus Resources and Bioinformatics
  • QTL for yield in bioenergy Populus: identifying GxE interactions from growth at three contrasting sites
  • Morphological and physiological traits influencing biomass productivity in short-rotation coppice poplar
  • The genetics and genomics of the drought response in Populus
  • Populus Short RNAs
  • Interspecific Plastome Recombination Reflects Ancient Reticulate Evolution in Picea (Pinaceae)
  • Yield and spatial supply of bioenergy poplar and willow short-rotation coppice in the UK
  • DNA methylome of the 20-gigabase Norway spruce genome
  • The transcriptome of Populus in elevated CO2
  • Paramutation-Like Interaction of T-DNA Loci in Arabidopsis
  • Improved gap size estimation for scaffolding algorithms
  • The transcriptome of Populus in elevated CO2 reveals increased anthocyanin biosynthesis during delayed autumnal senescence
  • Association genetics of complex traits in plants
  • The physiological, transcriptional and genetic responses of an ozone- sensitive and an ozone tolerant poplar and selected extremes of their F-2 progeny
  • A collection of INDEL markers for map-based cloning in seven Arabidopsis accessions
  • Identifying potential environmental impacts of large-scale deployment of dedicated bioenergy crops in the UK
  • The transcriptome of Populus in elevated CO2
  • The genetics and genomics of the drought response in Populus
  • A cross-species transcriptomics approach to identify genes involved in leaf development
  • LAMINA: a tool for rapid quantification of leaf size and shape parameters
  • QTL for yield in bioenergy Populus: identifying GxE interactions from growth at three contrasting sites
  • Yield and spatial supply of bioenergy poplar and willow short-rotation coppice in the UK
  • Five QTL hotspots for yield in short rotation coppice bioenergy poplar: The Poplar Biomass Loci
  • Genome-wide profiling of Populus small RNAs
  • The obscure events contributing to the evolution of an incipient sex chromosome in Populus: a retrospective working hypothesis
  • The Populus Genome Integrative Explorer (PopGenIE): a new resource for exploring the Populus genome
  • A systems biology model of the regulatory network in Populus leaves reveals interacting regulators and conserved regulation
  • Methylome of DNase I sensitive chromatin in Populus trichocarpa shoot apical meristematic cells: a simplified approach revealing characteristics of gene-body DNA methylation in open chromatin state
  • ComPlEx: conservation and divergence of co-expression networks in A. thaliana, Populus and O. sativa
  • Insights into Conifer Giga-Genomes
  • De Novo SNP Discovery in the Scandinavian Brown Bear (Ursus arctos)
  • Morphological and physiological traits influencing biomass productivity in short-rotation coppice poplar
  • A resource for characterizing genome-wide binding and putative target genes of transcription factors expressed during secondary growth and wood formation in Populus
  • The Plant Genome Integrative Explorer Resource: PlantGenIE.org
  • Natural Selection and Recombination Rate Variation Shape Nucleotide Polymorphism Across the Genomes of Three Related Populus Species
  • Variation in Linked Selection and Recombination Drive Genomic Divergence during Allopatric Speciation of European and American Aspens
  • Landscape relatedness: detecting contemporary fine-scale spatial structure in wild populations
  • NorWood: a gene expression resource for evo-devo studies of conifer wood development.
  • Spatially resolved transcriptome profiling in model plant species
  • Interspecific plastome recombination reflects ancient reticulate evolution in Picea (Pinaceae)
  • Demographic History and Natural Selection Shape Patterns of Deleterious Mutation Load and Barriers to Introgression across Populus Genome
  • Centromere-Specific Retrotransposons and Very-Long-Chain Fatty Acid Biosynthesis in the Genome of Yellowhorn (Xanthoceras sorbifolium, Sapindaceae), an Oil-Producing Tree With Significant Drought Resistance
  • Adaptive Introgression Facilitates Adaptation to High Latitudes in European Aspen (Populus tremula L.)
  • The mitogenome of Norway spruce and a reappraisal of mitochondrial recombination in plants
  • Natural variation at FLOWERING LOCUS T2 mediates local adaptation in a key life history trait in European aspen
  • High-spatial-resolution transcriptome profiling reveals uncharacterized regulatory complexity underlying cambial growth and wood formation in Populus tremula
  • Genetic markers and tree properties predicting wood biorefining potential in aspen (Populus tremula) bioenergy feedstock
  • Flexure wood formation via growth reprogramming in hybrid aspen involves jasmonates and polyamines and transcriptional changes resembling tension wood development
  • Genomic basis of seed colour in quinoa inferred from variant patterns using extreme gradient boosting
  • Evidence for widespread selection in shaping the genomic landscape during speciation of Populus
  • Genomic basis of the distinct biosynthesis of β‐glucogallin, a biochemical marker for hydrolyzable tannin production, in three oak species
  • A transcriptome atlas of zygotic and somatic embryogenesis in Norway spruce
  • High-quality genome assembly enables prediction of allele-specific gene expression in hybrid poplar
  • The super-pangenome of Populus unveils genomic facets for its adaptation and diversification in widespread forest trees
  • Effects of small-scale outplanting fertilization on conifer seedling growth and fungal community establishment

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Co-workers & collaborators

Pär Ingvarsson

Professor - Uppsala, Sweden

Pär Ingvarsson

Kathryn Robinson

Researcher - Umeå

Kathryn Robinson

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