NS
Publications
- Identification of new growth regulators using cross-species network analysis in plants
- Transcriptome analysis of embryonic domains in Norway spruce reveals potential regulators of suspensor cell death.
- Effects of Early, Small-Scale Nitrogen Addition on Germination and Early Growth of Scots Pine (Pinus sylvestris) Seedlings and on the Recruitment of the Root-Associated Fungal Community
- The BOP‐type co‐transcriptional regulator NODULE ROOT1 promotes stem secondary growth of the tropical Cannabaceae tree Parasponia andersonii
- Transcriptional roadmap to seasonal variation in wood formation of Norway spruce.
- Norway spruce deploys tissue specific canonical responses to acclimate to cold
- Genomics of forest trees
- Why does nitrogen addition to forest soils inhibit decomposition?
- Poplar carbohydrate-active enzymes: whole-genome annotation and functional analyses based on RNA expression data
- Cyberinfrastructure to Improve Forest Health and Productivity: The Role of Tree Databases in Connecting Genomes, Phenomes, and the Environment
- Systems and Synthetic Biology of Forest Trees: A Bioengineering Paradigm for Woody Biomass Feedstocks
- Functional and evolutionary genomic inferences in Populus through genome and population sequencing of American and European aspen
- Integrative Analysis of Three RNA Sequencing Methods Identifies Mutually Exclusive Exons of MADS-Box Isoforms During Early Bud Development in Picea abies
- Adaptive introgression and standing genetic variation, two facilitators of adaptation to high latitudes in European aspen (Populus tremula L.)
- A single gene underlies the dynamic evolution of poplar sex determination
- Evidence for widespread selection in shaping the genomic landscape during speciation of Populus
- Molecular basis of differential adventitious rooting competence in poplar genotypes
- Adaptive Introgression Facilitates Adaptation to High Latitudes in European Aspen (Populus Tremula L.) (vol 38, pg 5034, 2021)
- Demographic History and Natural Selection Shape Patterns of Deleterious Mutation Load and Barriers to Introgression across Populus Genome
- Centromere-Specific Retrotransposons and Very-Long-Chain Fatty Acid Biosynthesis in the Genome of Yellowhorn (Xanthoceras sorbifolium, Sapindaceae), an Oil-Producing Tree With Significant Drought Resistance
- qtlXplorer: an online systems genetics browser in the Eucalyptus Genome Integrative Explorer (EucGenIE)
- Adaptive Introgression Facilitates Adaptation to High Latitudes in European Aspen (Populus tremula L.)
- HIGH SPATIAL RESOLUTION PROFILING IN TREE SPECIES
- Chromosome-level genome assembly of a parent species of widely cultivated azaleas
- Microbial community response to growing season and plant nutrient optimisation in a boreal Norway spruce forest
- Designing Usable Bioinformatics Tools for Specialized Users
- AspWood: High-Spatial-Resolution Transcriptome Profiles Reveal Uncharacterized Modularity of Wood Formation in Populus tremula
- Norway spruce deploys tissue-specific responses during acclimation to cold
- Metatranscriptomics captures dynamic shifts in mycorrhizal coordination in boreal forests
- The Mitogenome of Norway Spruce and a Reappraisal of Mitochondrial Recombination in Plants.
- A major locus controls local adaptation and adaptive life history variation in a perennial plant
- Downregulating aspen xylan biosynthetic GT43 genes in developing wood stimulates growth via reprograming of the transcriptome
- Seiðr: Efficient calculation of robust ensemble gene networks
- Identification of growth regulators using cross-species network analysis in plants
- Cone‐setting in spruce is regulated by conserved elements of the age‐dependent flowering pathway
- Gene co-expression network connectivity is an important determinant of selective constraint
- A Key Role for Apoplastic H2O2 in Norway Spruce Phenolic Metabolism
- Seiðr: Efficient Calculation of Robust Ensemble Gene Networks
- An ultra-dense haploid genetic map for evaluating the highly fragmented genome assembly of Norway spruce (Picea abies)
- Storage lipid accumulation is controlled by photoperiodic signal acting via regulators of growth cessation and dormancy in hybrid aspen
- An Ultra-Dense Haploid Genetic Map for Evaluating the Highly Fragmented Genome Assembly of Norway Spruce (Picea abies)
- Constructing a high-density linkage map to infer the genomic landscape of recombination rate variation in European Aspen (Populus tremula)
- An Improved Genome Assembly of the European Aspen Populus tremula
- GenIE-Sys: Genome Integrative Explorer System
- Ray Parenchymal Cells Contribute to Lignification of Tracheids in Developing Xylem of Norway Spruce
- Inferring the Genomic Landscape of Recombination Rate Variation in European Aspen (Populus tremula)
- A metabolite roadmap of the wood‐forming tissue in Populus tremula
- Leaf shape in Populus tremula is a complex, omnigenic trait
- Candidate regulators and target genes of drought stress in needles and roots of Norway spruce
- Comparative Fungal Community Analyses Using Metatranscriptomics and Internal Transcribed Spacer Amplicon Sequencing from Norway Spruce
- Gene co-expression network connectivity is an important determinant of selective constraint
- Cytokinin and Auxin Display Distinct but Interconnected Distribution and Signaling Profiles to Stimulate Cambial Activity
- BatchMap: A parallel implementation of the OneMap R package for fast computation of F-1 linkage maps in outcrossing species
- Towards integration of population and comparative genomics in forest trees.
- The Norway spruce genome sequence and conifer genome evolution
- Comparative physiology of allopatric Populus species: geographic clines in photosynthesis, height growth, and carbon isotope discrimination in common gardens
- Serendipitous Meta-Transcriptomics: The Fungal Community of Norway Spruce (Picea abies)
- Populus tremula (European aspen) shows no evidence of sexual dimorphism
- Leaf growth and development of Populus - Is cell expansion or cell production most important?
- A genomics and quantitative genetics approach to understanding ozone sensitivity in Poplar
- Populus Resources and Bioinformatics
- QTL for yield in bioenergy Populus: identifying GxE interactions from growth at three contrasting sites
- Morphological and physiological traits influencing biomass productivity in short-rotation coppice poplar
- The genetics and genomics of the drought response in Populus
- Populus Short RNAs
- Interspecific Plastome Recombination Reflects Ancient Reticulate Evolution in Picea (Pinaceae)
- Yield and spatial supply of bioenergy poplar and willow short-rotation coppice in the UK
- DNA methylome of the 20-gigabase Norway spruce genome
- The transcriptome of Populus in elevated CO2
- Paramutation-Like Interaction of T-DNA Loci in Arabidopsis
- Improved gap size estimation for scaffolding algorithms
- The transcriptome of Populus in elevated CO2 reveals increased anthocyanin biosynthesis during delayed autumnal senescence
- Association genetics of complex traits in plants
- The physiological, transcriptional and genetic responses of an ozone- sensitive and an ozone tolerant poplar and selected extremes of their F-2 progeny
- A collection of INDEL markers for map-based cloning in seven Arabidopsis accessions
- Identifying potential environmental impacts of large-scale deployment of dedicated bioenergy crops in the UK
- The transcriptome of Populus in elevated CO2
- The genetics and genomics of the drought response in Populus
- A cross-species transcriptomics approach to identify genes involved in leaf development
- LAMINA: a tool for rapid quantification of leaf size and shape parameters
- QTL for yield in bioenergy Populus: identifying GxE interactions from growth at three contrasting sites
- Yield and spatial supply of bioenergy poplar and willow short-rotation coppice in the UK
- Five QTL hotspots for yield in short rotation coppice bioenergy poplar: The Poplar Biomass Loci
- Genome-wide profiling of Populus small RNAs
- The obscure events contributing to the evolution of an incipient sex chromosome in Populus: a retrospective working hypothesis
- The Populus Genome Integrative Explorer (PopGenIE): a new resource for exploring the Populus genome
- A systems biology model of the regulatory network in Populus leaves reveals interacting regulators and conserved regulation
- Methylome of DNase I sensitive chromatin in Populus trichocarpa shoot apical meristematic cells: a simplified approach revealing characteristics of gene-body DNA methylation in open chromatin state
- ComPlEx: conservation and divergence of co-expression networks in A. thaliana, Populus and O. sativa
- Insights into Conifer Giga-Genomes
- De Novo SNP Discovery in the Scandinavian Brown Bear (Ursus arctos)
- Morphological and physiological traits influencing biomass productivity in short-rotation coppice poplar
- A resource for characterizing genome-wide binding and putative target genes of transcription factors expressed during secondary growth and wood formation in Populus
- The Plant Genome Integrative Explorer Resource: PlantGenIE.org
- Natural Selection and Recombination Rate Variation Shape Nucleotide Polymorphism Across the Genomes of Three Related Populus Species
- Variation in Linked Selection and Recombination Drive Genomic Divergence during Allopatric Speciation of European and American Aspens
- Landscape relatedness: detecting contemporary fine-scale spatial structure in wild populations
- NorWood: a gene expression resource for evo-devo studies of conifer wood development.
- Spatially resolved transcriptome profiling in model plant species
- Interspecific plastome recombination reflects ancient reticulate evolution in Picea (Pinaceae)
- Demographic History and Natural Selection Shape Patterns of Deleterious Mutation Load and Barriers to Introgression across Populus Genome
- Centromere-Specific Retrotransposons and Very-Long-Chain Fatty Acid Biosynthesis in the Genome of Yellowhorn (Xanthoceras sorbifolium, Sapindaceae), an Oil-Producing Tree With Significant Drought Resistance
- Adaptive Introgression Facilitates Adaptation to High Latitudes in European Aspen (Populus tremula L.)
- The mitogenome of Norway spruce and a reappraisal of mitochondrial recombination in plants
- Natural variation at FLOWERING LOCUS T2 mediates local adaptation in a key life history trait in European aspen
- High-spatial-resolution transcriptome profiling reveals uncharacterized regulatory complexity underlying cambial growth and wood formation in Populus tremula
- Genetic markers and tree properties predicting wood biorefining potential in aspen (Populus tremula) bioenergy feedstock
- Flexure wood formation via growth reprogramming in hybrid aspen involves jasmonates and polyamines and transcriptional changes resembling tension wood development
- Genomic basis of seed colour in quinoa inferred from variant patterns using extreme gradient boosting
- Evidence for widespread selection in shaping the genomic landscape during speciation of Populus
- Genomic basis of the distinct biosynthesis of β‐glucogallin, a biochemical marker for hydrolyzable tannin production, in three oak species
- A transcriptome atlas of zygotic and somatic embryogenesis in Norway spruce
- High-quality genome assembly enables prediction of allele-specific gene expression in hybrid poplar
- The super-pangenome of Populus unveils genomic facets for its adaptation and diversification in widespread forest trees
- Effects of small-scale outplanting fertilization on conifer seedling growth and fungal community establishment
- Systems genetic analysis of lignin biosynthesis in Populus tremula
- Interspecific plastome recombination reflects ancient reticulate evolution inPicea(Pinaceae)
- An Improved Chromosome-scale Genome Assembly and Population Genetics resource for Populus tremula
- Harmonising genomics research excellence and stakeholder needs in conservation management
- A resource of identified and annotated lincRNAs expressed during somatic embryogenesis development in Norway spruce
- High spatial resolution profiling in tree species
- Whole-genome resequencing facilitates the development of a 50K single nucleotide polymorphism genotyping array for Scots pine (Pinus sylvestris L.) and its transferability to other pine species
- Effects of early, small-scale nitrogen addition on germination and early growth of scots pine (Pinus sylvestris) seedlings and on the recruitment of the root-associated fungal community
- Cone-setting in spruce is regulated by conserved elements of the age-dependent flowering pathway
- Ray parenchymal cells contribute to lignification of tracheids in developing xylem of Norway SpRuce
- A metabolite roadmap of the wood-forming tissue in Populus tremula
- An Improved Chromosome-scale Genome Assembly and Population Genetics resource for Populus tremula.
- An Ultra-Dense haploid genetic map for evaluating the highly fragmented genome assembly of Norway spruce (picea abies)
- The super-pangenome of Populus unveil genomic facets for adaptation and diversification in widespread forest trees
- Inferring the genomic landscape of recombination rate variation in European Aspen (Populus tremula)
- Cyberinfrastructure to improve forest health and productivity: The role of tree databases in connecting genomes, phenomes, and the environment
- Identification of new Leaf intrinsic yield genes using cross-species network analysis in plants
- The BOP-type co-transcriptional regulator NODULE ROOT1 promotes stem secondary growth of the tropical Cannabaceae tree Parasponia andersonii
- Comparative fungal community analyses using metatranscriptomics and internal transcribed spacer amplicon sequencing from Norway spruce
- Genomic basis of the distinct biosynthesis of β-glucogallin, a biochemical marker for hydrolyzable tannin production, in three oak species
- Erratum: Adaptive Introgression Facilitates Adaptation to High Latitudes in European Aspen (Populus Tremula L.) (Molecular Biology and Evolution (2021) 38:11 (5034-5050) DOI: 10.1093/molbev/msab229)
- Systems and synthetic biology of forest trees: A bioengineering paradigm for woody biomass feedstocks
- NorWood: a gene expression resource for evo-devo studies of conifer wood development
- Transcriptional roadmap to seasonal variation in wood formation of Norway spruce
- Integrative analysis of three RNA sequencing methods identifies mutually exclusive exons of MADS-box isoforms during early bud development in picea abies
- The transcriptome of Populus in elevated CO2 reveals increased anthocyanin biosynthesis during delayed autumnal senescence
- Transcriptome analysis of embryonic domains in Norway spruce reveals potential regulators of suspensor cell death
- A key role for apoplastic H2 O2 in Norway spruce phenolic metabolism
- BatchMap: A parallel implementation of the OneMap R package for fast computation of F1 linkage maps in outcrossing species
- Serendipitous meta-transcriptomics: The fungal community of Norway spruce (Picea abies)
- Seidr: A gene meta-network calculation toolkit
- ComPlEx: Conservation and divergence of co-expression networks in A. thaliana, Populus and O. sativa
- Methylome of DNase I sensitive chromatin in Populus trichocarpa shoot apical meristematic cells: A simplified approach revealing characteristics of gene-body DNA methylation in open chromatin state
- The Populus Genome Integrative Explorer (PopGenIE): A new resource for exploring the Populus genome
- The obscure events contributing to the evolution of an incipient sex chromosome in Populus: A retrospective working hypothesis
- Comparative physiology of allopatric Populus species: Geographic clines in photosynthesis, height growth, and carbon isotope discrimination in common gardens
- The physiological, transcriptional and genetic responses of an ozone- sensitive and an ozone tolerant poplar and selected extremes of their F 2 progeny
- Aspwood: High-spatial-resolution transcriptome profiles reveal uncharacterized modularity of wood formation in populus tremula
- Natural selection and recombination rate variation shape nucleotide polymorphism across the genomes of three related populus species
- Insights into conifer giga-genomes
- De novo SNP discovery in the scandinavian brown bear (Ursus arctos)
- Towards integration of population and comparative genomics in forest trees
- QTL for yield in bioenergy Populus: Identifying G×E interactions from growth at three contrasting sites
- LAMINA: A tool for rapid quantification of leaf size and shape parameters
- Yield and spatial supply of bioenergy poplar and willow short-rotation coppice in the UK (New Phytologist (2008) 178, (358-370))
- The transcriptome of Populus in elevated CO2
- Data‐driven resources and computational tools in non‐model plant species
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Co-workers & collaborators
- KR
Kathryn Robinson
Researcher - Umeå
- CC
Camilla Canovi
- BS
Bastian Schiffthaler
- PI
Pär Ingvarsson
Professor - Uppsala, Sweden
- UE
Ulrika Egertsdotter
- ND
Nicolas Delhomme