Nathaniel Street

Publications

• Identification of new growth regulators using cross-species network analysis in plants
• Transcriptome analysis of embryonic domains in Norway spruce reveals potential regulators of suspensor cell death.
• Effects of Early, Small-Scale Nitrogen Addition on Germination and Early Growth of Scots Pine (Pinus sylvestris) Seedlings and on the Recruitment of the Root-Associated Fungal Community
• The BOP‐type co‐transcriptional regulator NODULE ROOT1 promotes stem secondary growth of the tropical Cannabaceae tree Parasponia andersonii
• Transcriptional roadmap to seasonal variation in wood formation of Norway spruce.
• Norway spruce deploys tissue specific canonical responses to acclimate to cold
• Genomics of forest trees
• Why does nitrogen addition to forest soils inhibit decomposition?
• Poplar carbohydrate-active enzymes: whole-genome annotation and functional analyses based on RNA expression data
• Cyberinfrastructure to Improve Forest Health and Productivity: The Role of Tree Databases in Connecting Genomes, Phenomes, and the Environment
• Systems and Synthetic Biology of Forest Trees: A Bioengineering Paradigm for Woody Biomass Feedstocks
• Functional and evolutionary genomic inferences in Populus through genome and population sequencing of American and European aspen
• Integrative Analysis of Three RNA Sequencing Methods Identifies Mutually Exclusive Exons of MADS-Box Isoforms During Early Bud Development in Picea abies
• Adaptive introgression and standing genetic variation, two facilitators of adaptation to high latitudes in European aspen (Populus tremula L.)
• A single gene underlies the dynamic evolution of poplar sex determination
• Evidence for widespread selection in shaping the genomic landscape during speciation of Populus
• Molecular basis of differential adventitious rooting competence in poplar genotypes
• Adaptive Introgression Facilitates Adaptation to High Latitudes in European Aspen (Populus Tremula L.) (vol 38, pg 5034, 2021)
• Demographic History and Natural Selection Shape Patterns of Deleterious Mutation Load and Barriers to Introgression across Populus Genome
• Centromere-Specific Retrotransposons and Very-Long-Chain Fatty Acid Biosynthesis in the Genome of Yellowhorn (Xanthoceras sorbifolium, Sapindaceae), an Oil-Producing Tree With Significant Drought Resistance
• qtlXplorer: an online systems genetics browser in the Eucalyptus Genome Integrative Explorer (EucGenIE)
• Adaptive Introgression Facilitates Adaptation to High Latitudes in European Aspen (Populus tremula L.)
• HIGH SPATIAL RESOLUTION PROFILING IN TREE SPECIES
• Chromosome-level genome assembly of a parent species of widely cultivated azaleas
• Microbial community response to growing season and plant nutrient optimisation in a boreal Norway spruce forest
• Designing Usable Bioinformatics Tools for Specialized Users
• AspWood: High-Spatial-Resolution Transcriptome Profiles Reveal Uncharacterized Modularity of Wood Formation in Populus tremula
• Norway spruce deploys tissue-specific responses during acclimation to cold
• Metatranscriptomics captures dynamic shifts in mycorrhizal coordination in boreal forests
• The Mitogenome of Norway Spruce and a Reappraisal of Mitochondrial Recombination in Plants.
• A major locus controls local adaptation and adaptive life history variation in a perennial plant
• Downregulating aspen xylan biosynthetic GT43 genes in developing wood stimulates growth via reprograming of the transcriptome
• Seiðr: Efficient calculation of robust ensemble gene networks
• Identification of growth regulators using cross-species network analysis in plants
• Cone‐setting in spruce is regulated by conserved elements of the age‐dependent flowering pathway
• Gene co-expression network connectivity is an important determinant of selective constraint
• A Key Role for Apoplastic H2O2 in Norway Spruce Phenolic Metabolism
• Seiðr: Efficient Calculation of Robust Ensemble Gene Networks
• An ultra-dense haploid genetic map for evaluating the highly fragmented genome assembly of Norway spruce (Picea abies)
• Storage lipid accumulation is controlled by photoperiodic signal acting via regulators of growth cessation and dormancy in hybrid aspen
• An Ultra-Dense Haploid Genetic Map for Evaluating the Highly Fragmented Genome Assembly of Norway Spruce (Picea abies)
• Constructing a high-density linkage map to infer the genomic landscape of recombination rate variation in European Aspen (Populus tremula)
• An Improved Genome Assembly of the European Aspen Populus tremula
• GenIE-Sys: Genome Integrative Explorer System
• Ray Parenchymal Cells Contribute to Lignification of Tracheids in Developing Xylem of Norway Spruce
• Inferring the Genomic Landscape of Recombination Rate Variation in European Aspen (Populus tremula)
• A metabolite roadmap of the wood‐forming tissue in Populus tremula
• Leaf shape in Populus tremula is a complex, omnigenic trait
• Candidate regulators and target genes of drought stress in needles and roots of Norway spruce
• Comparative Fungal Community Analyses Using Metatranscriptomics and Internal Transcribed Spacer Amplicon Sequencing from Norway Spruce
• Gene co-expression network connectivity is an important determinant of selective constraint
• Cytokinin and Auxin Display Distinct but Interconnected Distribution and Signaling Profiles to Stimulate Cambial Activity
• BatchMap: A parallel implementation of the OneMap R package for fast computation of F-1 linkage maps in outcrossing species
• Towards integration of population and comparative genomics in forest trees.
• The Norway spruce genome sequence and conifer genome evolution
• Comparative physiology of allopatric Populus species: geographic clines in photosynthesis, height growth, and carbon isotope discrimination in common gardens
• Serendipitous Meta-Transcriptomics: The Fungal Community of Norway Spruce (Picea abies)
• Populus tremula (European aspen) shows no evidence of sexual dimorphism
• Leaf growth and development of Populus - Is cell expansion or cell production most important?
• A genomics and quantitative genetics approach to understanding ozone sensitivity in Poplar
• Populus Resources and Bioinformatics
• QTL for yield in bioenergy Populus: identifying GxE interactions from growth at three contrasting sites
• Morphological and physiological traits influencing biomass productivity in short-rotation coppice poplar
• The genetics and genomics of the drought response in Populus
• Populus Short RNAs
• Interspecific Plastome Recombination Reflects Ancient Reticulate Evolution in Picea (Pinaceae)
• Yield and spatial supply of bioenergy poplar and willow short-rotation coppice in the UK
• DNA methylome of the 20-gigabase Norway spruce genome
• The transcriptome of Populus in elevated CO2
• Paramutation-Like Interaction of T-DNA Loci in Arabidopsis
• Improved gap size estimation for scaffolding algorithms
• The transcriptome of Populus in elevated CO2 reveals increased anthocyanin biosynthesis during delayed autumnal senescence
• Association genetics of complex traits in plants
• The physiological, transcriptional and genetic responses of an ozone- sensitive and an ozone tolerant poplar and selected extremes of their F-2 progeny
• A collection of INDEL markers for map-based cloning in seven Arabidopsis accessions
• Identifying potential environmental impacts of large-scale deployment of dedicated bioenergy crops in the UK
• The transcriptome of Populus in elevated CO2
• The genetics and genomics of the drought response in Populus
• A cross-species transcriptomics approach to identify genes involved in leaf development
• LAMINA: a tool for rapid quantification of leaf size and shape parameters
• QTL for yield in bioenergy Populus: identifying GxE interactions from growth at three contrasting sites
• Yield and spatial supply of bioenergy poplar and willow short-rotation coppice in the UK
• Five QTL hotspots for yield in short rotation coppice bioenergy poplar: The Poplar Biomass Loci
• Genome-wide profiling of Populus small RNAs
• The obscure events contributing to the evolution of an incipient sex chromosome in Populus: a retrospective working hypothesis
• The Populus Genome Integrative Explorer (PopGenIE): a new resource for exploring the Populus genome
• A systems biology model of the regulatory network in Populus leaves reveals interacting regulators and conserved regulation
• Methylome of DNase I sensitive chromatin in Populus trichocarpa shoot apical meristematic cells: a simplified approach revealing characteristics of gene-body DNA methylation in open chromatin state
• ComPlEx: conservation and divergence of co-expression networks in A. thaliana, Populus and O. sativa
• Insights into Conifer Giga-Genomes
• De Novo SNP Discovery in the Scandinavian Brown Bear (Ursus arctos)
• Morphological and physiological traits influencing biomass productivity in short-rotation coppice poplar
• A resource for characterizing genome-wide binding and putative target genes of transcription factors expressed during secondary growth and wood formation in Populus
• The Plant Genome Integrative Explorer Resource: PlantGenIE.org
• Natural Selection and Recombination Rate Variation Shape Nucleotide Polymorphism Across the Genomes of Three Related Populus Species
• Variation in Linked Selection and Recombination Drive Genomic Divergence during Allopatric Speciation of European and American Aspens
• Landscape relatedness: detecting contemporary fine-scale spatial structure in wild populations
• NorWood: a gene expression resource for evo-devo studies of conifer wood development.
• Spatially resolved transcriptome profiling in model plant species
• Interspecific plastome recombination reflects ancient reticulate evolution in Picea (Pinaceae)
• Demographic History and Natural Selection Shape Patterns of Deleterious Mutation Load and Barriers to Introgression across Populus Genome
• Centromere-Specific Retrotransposons and Very-Long-Chain Fatty Acid Biosynthesis in the Genome of Yellowhorn (Xanthoceras sorbifolium, Sapindaceae), an Oil-Producing Tree With Significant Drought Resistance
• Adaptive Introgression Facilitates Adaptation to High Latitudes in European Aspen (Populus tremula L.)
• The mitogenome of Norway spruce and a reappraisal of mitochondrial recombination in plants
• Natural variation at FLOWERING LOCUS T2 mediates local adaptation in a key life history trait in European aspen
• High-spatial-resolution transcriptome profiling reveals uncharacterized regulatory complexity underlying cambial growth and wood formation in Populus tremula
• Genetic markers and tree properties predicting wood biorefining potential in aspen (Populus tremula) bioenergy feedstock
• Flexure wood formation via growth reprogramming in hybrid aspen involves jasmonates and polyamines and transcriptional changes resembling tension wood development
• Genomic basis of seed colour in quinoa inferred from variant patterns using extreme gradient boosting
• Evidence for widespread selection in shaping the genomic landscape during speciation of Populus
• Genomic basis of the distinct biosynthesis of β‐glucogallin, a biochemical marker for hydrolyzable tannin production, in three oak species
• A transcriptome atlas of zygotic and somatic embryogenesis in Norway spruce
• High-quality genome assembly enables prediction of allele-specific gene expression in hybrid poplar
• The super-pangenome of Populus unveils genomic facets for its adaptation and diversification in widespread forest trees
• Effects of small-scale outplanting fertilization on conifer seedling growth and fungal community establishment
• Systems genetic analysis of lignin biosynthesis in Populus tremula
• Interspecific plastome recombination reflects ancient reticulate evolution inPicea(Pinaceae)
• An Improved Chromosome-scale Genome Assembly and Population Genetics resource for Populus tremula
• Harmonising genomics research excellence and stakeholder needs in conservation management
• A resource of identified and annotated lincRNAs expressed during somatic embryogenesis development in Norway spruce
• High spatial resolution profiling in tree species
• Whole-genome resequencing facilitates the development of a 50K single nucleotide polymorphism genotyping array for Scots pine (Pinus sylvestris L.) and its transferability to other pine species
• Effects of early, small-scale nitrogen addition on germination and early growth of scots pine (Pinus sylvestris) seedlings and on the recruitment of the root-associated fungal community
• Cone-setting in spruce is regulated by conserved elements of the age-dependent flowering pathway
• Ray parenchymal cells contribute to lignification of tracheids in developing xylem of Norway SpRuce
• A metabolite roadmap of the wood-forming tissue in Populus tremula
• An Improved Chromosome-scale Genome Assembly and Population Genetics resource for Populus tremula.
• An Ultra-Dense haploid genetic map for evaluating the highly fragmented genome assembly of Norway spruce (picea abies)
• The super-pangenome of Populus unveil genomic facets for adaptation and diversification in widespread forest trees
• Inferring the genomic landscape of recombination rate variation in European Aspen (Populus tremula)
• Cyberinfrastructure to improve forest health and productivity: The role of tree databases in connecting genomes, phenomes, and the environment
• Identification of new Leaf intrinsic yield genes using cross-species network analysis in plants
• The BOP-type co-transcriptional regulator NODULE ROOT1 promotes stem secondary growth of the tropical Cannabaceae tree Parasponia andersonii
• Comparative fungal community analyses using metatranscriptomics and internal transcribed spacer amplicon sequencing from Norway spruce
• Genomic basis of the distinct biosynthesis of β-glucogallin, a biochemical marker for hydrolyzable tannin production, in three oak species
• Erratum: Adaptive Introgression Facilitates Adaptation to High Latitudes in European Aspen (Populus Tremula L.) (Molecular Biology and Evolution (2021) 38:11 (5034-5050) DOI: 10.1093/molbev/msab229)
• Systems and synthetic biology of forest trees: A bioengineering paradigm for woody biomass feedstocks
• NorWood: a gene expression resource for evo-devo studies of conifer wood development
• Transcriptional roadmap to seasonal variation in wood formation of Norway spruce
• Integrative analysis of three RNA sequencing methods identifies mutually exclusive exons of MADS-box isoforms during early bud development in picea abies
• The transcriptome of Populus in elevated CO2 reveals increased anthocyanin biosynthesis during delayed autumnal senescence
• Transcriptome analysis of embryonic domains in Norway spruce reveals potential regulators of suspensor cell death
• A key role for apoplastic H2 O2 in Norway spruce phenolic metabolism
• BatchMap: A parallel implementation of the OneMap R package for fast computation of F1 linkage maps in outcrossing species
• Serendipitous meta-transcriptomics: The fungal community of Norway spruce (Picea abies)
• Seidr: A gene meta-network calculation toolkit
• ComPlEx: Conservation and divergence of co-expression networks in A. thaliana, Populus and O. sativa
• Methylome of DNase I sensitive chromatin in Populus trichocarpa shoot apical meristematic cells: A simplified approach revealing characteristics of gene-body DNA methylation in open chromatin state
• The Populus Genome Integrative Explorer (PopGenIE): A new resource for exploring the Populus genome
• The obscure events contributing to the evolution of an incipient sex chromosome in Populus: A retrospective working hypothesis
• Comparative physiology of allopatric Populus species: Geographic clines in photosynthesis, height growth, and carbon isotope discrimination in common gardens
• The physiological, transcriptional and genetic responses of an ozone- sensitive and an ozone tolerant poplar and selected extremes of their F 2 progeny
• Aspwood: High-spatial-resolution transcriptome profiles reveal uncharacterized modularity of wood formation in populus tremula
• Natural selection and recombination rate variation shape nucleotide polymorphism across the genomes of three related populus species
• Insights into conifer giga-genomes
• De novo SNP discovery in the scandinavian brown bear (Ursus arctos)
• Towards integration of population and comparative genomics in forest trees
• QTL for yield in bioenergy Populus: Identifying G×E interactions from growth at three contrasting sites
• LAMINA: A tool for rapid quantification of leaf size and shape parameters
• Yield and spatial supply of bioenergy poplar and willow short-rotation coppice in the UK (New Phytologist (2008) 178, (358-370))
• The transcriptome of Populus in elevated CO2
• Data‐driven resources and computational tools in non‐model plant species