AA
Publications
- Active sulfur cycling in the terrestrial deep subsurface
- Evaluating metagenomic assembly approaches for biome-specific gene catalogues
- Short‐ and long‐read metabarcoding of the eukaryotic rRNA operon: Evaluation of primers and comparison to shotgun metagenomics sequencing
- Optimizing insect metabarcoding using replicated mock communities
- Linking prokaryotic genome size variation to metabolic potential and environment
- Optimizing insect metabarcoding using replicated mock communities
- Lake bacterioplankton dynamics over diurnal timescales
- Mineral Type Structures Soil Microbial Communities
- Metapopulation theory identifies biogeographical patterns among core and satellite marine bacteria scaling from tens to thousands of kilometers
- Multiscale patterns and drivers of arbuscular mycorrhizal fungal communities in the roots and root-associated soil of a wild perennial herb
- Stationary and portable sequencing-based approaches for tracing wastewater contamination in urban stormwater systems
- New mitochondrial primers for metabarcoding of insects, designed and evaluated using in silico methods
- Coupling biogeochemical process rates and metagenomic blueprints of coastal bacterial assemblages in the context of environmental change
- Genomic analysis reveals the presence of a class D beta-lactamase with broad substrate specificity in animal bite associated Capnocytophaga species
- Potential for hydrogen-oxidizing chemolithoautotrophic and diazotrophic populations to initiate biofilm formation in oligotrophic, deep terrestrial subsurface waters
- Phylogenetic Signals of Salinity and Season in Bacterial Community Composition Across the Salinity Gradient of the Baltic Sea
- Colonization and Succession within the Human Gut Microbiome by Archaea, Bacteria, and Microeukaryotes during the First Year of Life
- BARM and BalticMicrobeDB, a reference metagenome and interface to meta-omic data for the Baltic Sea
- Analysing Microbial Community Composition through Amplicon Sequencing: From Sampling to Hypothesis Testing
- Improvement of identification methods for honeybee specific Lactic Acid Bacteria; future approaches
- Reconstructing a hydrogen-driven microbial metabolic network in Opalinus Clay rock
- Ninety-nine de novo assembled genomes from the moose (Alces alces) rumen microbiome provide new insights into microbial plant biomass degradation
- Diversity of Pico- to Mesoplankton along the 2000 km Salinity Gradient of the Baltic Sea
- Periodontal Health and Oral Microbiota in Patients with Rheumatoid Arthritis.
- Atmospheric Deposition Impact on Bacterial Community Composition in the NW Mediterranean.
- Genomes from uncultivated prokaryotes: a comparison of metagenome-assembled and single-amplified genomes.
- Birth mode is associated with earliest strain-conferred gut microbiome functions and immunostimulatory potential.
- AFISsys - An autonomous instrument for the preservation of brackish water samples for microbial metatranscriptome analysis.
- Prevalent reliance of bacterioplankton on exogenous vitamin B1 and precursor availability.
- Biogeochemical Cycling by a Low-Diversity Microbial Community in Deep Groundwater.
- Towards high-throughput parallel imaging and single-cell transcriptomics of microbial eukaryotic plankton
- Large-scale phylogenomics of aquatic bacteria reveal molecular mechanisms for adaptation to salinity
- Microbial model communities reveal widespread auxotrophies in abundant bacteria
- Introducing guidelines for publishing DNA-derived occurrence data through biodiversity data platforms
- Large-scale phylogenomics of aquatic bacteria reveal molecular mechanisms for adaptation to salinity
- Evaluating metagenomic assembly approaches for biome-specific gene catalogues
- The Fennoscandian Shield deep terrestrial virosphere suggests slow motion ‘boom and burst’ cycles
- Genome sequence of segmented filamentous bacteria present in the human intestine
- Stationary and portable sequencing-based approaches for tracing wastewater contamination in urban stormwater systems
- Reconstructing a hydrogen-driven microbial metabolic network in Opalinus Clay rock
- ASV portal: an interface to DNA-based biodiversity data in the Living Atlas
- The environment drives microbial trait variability in aquatic habitats
- A comprehensive dataset on spatiotemporal variation of microbial plankton communities in the Baltic Sea
- Ecologically coherent population structure of uncultivated bacterioplankton
- Linking prokaryotic genome size variation to metabolic potential and environment
- New chemical and microbial perspectives on vitamin B1 and vitamer dynamics of a coastal system
- Marine snow as a habitat for microbial mercury methylators in the Baltic Sea
- Revealing ecologically coherent population structure of uncultivated bacterioplankton with POGENOM
- Distinct bacterial and protist plankton diversity dynamics uncovered through DNA-based monitoring in the Baltic Sea area
- Temperature, sediment resuspension, and salinity drive the prevalence of Vibrio vulnificus in the coastal Baltic Sea
- Identification of the missing links in prokaryotic pentose oxidation pathways: evidence for enzyme recruitment
- Dual-genome primer design for construction of DNA microarrays
- High archaeal diversity in Antarctic circumpolar deep waters
- Community-wide analysis of microbial genome sequence signatures
- Systematic design of 18S rRNA gene primers for determining eukaryotic diversity in microbial consortia
- Rapid screening of complex DNA samples by single-molecule amplification and sequencing
- The impact of Crohn's disease genes on healthy human gut microbiota: a pilot study
- Three replication origins in Sulfolobus species: synchronous initiation of chromosome replication and asynchronous termination
- 9 Functional Genomics of the Thermo-Acidophilic Archaeon Sulfolobus solfataricus
- Disentangling seasonal bacterioplankton population dynamics by high-frequency sampling
- DegePrime, a program for degenerate primer design for broad-taxonomic-range PCR in microbial ecology studies
- Rolf Bernander (1956-2014): pioneer of the archaeal cell cycle
- Functional tradeoffs underpin salinity-driven divergence in microbial community composition
- Bacterial community composition in the water column of a lake formed by a former uranium open pit mine
- A method for metagenomics of Helicobacter pylori from archived formalin-fixed gastric biopsies permitting longitudinal studies of carcinogenic risk
- Global analysis of mRNA stability in the archaeon Sulfolobus
- Titration-free 454 sequencing using Y adapters
- Genome sequencing reveals a phage in Helicobacter pylori
- Freshwater bacterioplankton richness in oligotrophic lakes depends on nutrient availability rather than on species-area relationships
- Metagenomic de novo assembly of an aquatic representative of the verrucomicrobial class Spartobacteria
- Active nitrogen-fixing heterotrophic bacteria at and below the chemocline of the central Baltic Sea
- Which sequencing depth is sufficient to describe patterns in bacterial $α$- and $β$-diversity?
- Nitrogenase gene amplicons from global marine surface waters are dominated by genes of non-cyanobacteria
- Reply: To PMID 22153774
- Replication-biased genome organisation in the crenarchaeon Sulfolobus
- Titration-free massively parallel pyrosequencing using trace amounts of starting material
- Functional analysis of the M.HpyAIV DNA methyltransferase of Helicobacter pylori
- Transitions in bacterial communities along the 2000 km salinity gradient of the Baltic Sea
- Virus population dynamics and acquired virus resistance in natural microbial communities
- Novel primers for 16S rRNA-based archaeal community analyses in environmental samples
- Community proteogenomics highlights microbial strain-variant protein expression within activated sludge performing enhanced biological phosphorus removal
- Pyrosequencing reveals contrasting seasonal dynamics of taxa within Baltic Sea bacterioplankton communities
- Decreased gut microbiota diversity, delayed Bacteroidetes colonisation and reduced Th1 responses in infants delivered by caesarean section
- Low gut microbiota diversity in early infancy precedes asthma at school age
- Binning metagenomic contigs by coverage and composition
- Decreased gut microbiota diversity, delayed Bacteroidetes colonisation and reduced Th1 responses in infants delivered by caesarean section
- A pyrosequencing study in twins shows that gastrointestinal microbial profiles vary with inflammatory bowel disease phenotypes
- Comparative analysis of human gut microbiota by barcoded pyrosequencing
- Low diversity of the gut microbiota in infants with atopic eczema
- Short-term antibiotic treatment has differing long-term impacts on the human throat and gut microbiome
- Experimental insights into the importance of aquatic bacterial community composition to the degradation of dissolved organic matter
- Metagenome-assembled genomes uncover a global brackish microbiome
- Phasing of single DNA molecules by massively parallel barcoding
- A minimalistic microbial food web in an excavated deep subsurface clay rock
- Whole genome sequencing identifies a novel species of the genus Capnocytophaga isolated from dog and cat bite wounds in humans
- Experimental insights into the importance of aquatic bacterial community composition to the degradation of dissolved organic matter
- Metagenome-assembled genomes uncover a global brackish microbiome
- Diversity of Pico- to Mesoplankton Along the 2000 km Salinity Gradient of the Baltic Sea
- Comparing the performance of functional versus taxonomic metagenomics for detecting ammonia disturbances in the biogas system