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Anders Andersson

Publications

  • Active sulfur cycling in the terrestrial deep subsurface
  • Evaluating metagenomic assembly approaches for biome-specific gene catalogues
  • Short‐ and long‐read metabarcoding of the eukaryotic rRNA operon: Evaluation of primers and comparison to shotgun metagenomics sequencing
  • Optimizing insect metabarcoding using replicated mock communities
  • Linking prokaryotic genome size variation to metabolic potential and environment
  • Optimizing insect metabarcoding using replicated mock communities
  • Lake bacterioplankton dynamics over diurnal timescales
  • Mineral Type Structures Soil Microbial Communities
  • Metapopulation theory identifies biogeographical patterns among core and satellite marine bacteria scaling from tens to thousands of kilometers
  • Multiscale patterns and drivers of arbuscular mycorrhizal fungal communities in the roots and root-associated soil of a wild perennial herb
  • Stationary and portable sequencing-based approaches for tracing wastewater contamination in urban stormwater systems
  • New mitochondrial primers for metabarcoding of insects, designed and evaluated using in silico methods
  • Coupling biogeochemical process rates and metagenomic blueprints of coastal bacterial assemblages in the context of environmental change
  • Genomic analysis reveals the presence of a class D beta-lactamase with broad substrate specificity in animal bite associated Capnocytophaga species
  • Potential for hydrogen-oxidizing chemolithoautotrophic and diazotrophic populations to initiate biofilm formation in oligotrophic, deep terrestrial subsurface waters
  • Phylogenetic Signals of Salinity and Season in Bacterial Community Composition Across the Salinity Gradient of the Baltic Sea
  • Colonization and Succession within the Human Gut Microbiome by Archaea, Bacteria, and Microeukaryotes during the First Year of Life
  • BARM and BalticMicrobeDB, a reference metagenome and interface to meta-omic data for the Baltic Sea
  • Analysing Microbial Community Composition through Amplicon Sequencing: From Sampling to Hypothesis Testing
  • Improvement of identification methods for honeybee specific Lactic Acid Bacteria; future approaches
  • Reconstructing a hydrogen-driven microbial metabolic network in Opalinus Clay rock
  • Ninety-nine de novo assembled genomes from the moose (Alces alces) rumen microbiome provide new insights into microbial plant biomass degradation
  • Diversity of Pico- to Mesoplankton along the 2000 km Salinity Gradient of the Baltic Sea
  • Periodontal Health and Oral Microbiota in Patients with Rheumatoid Arthritis.
  • Atmospheric Deposition Impact on Bacterial Community Composition in the NW Mediterranean.
  • Genomes from uncultivated prokaryotes: a comparison of metagenome-assembled and single-amplified genomes.
  • Birth mode is associated with earliest strain-conferred gut microbiome functions and immunostimulatory potential.
  • AFISsys - An autonomous instrument for the preservation of brackish water samples for microbial metatranscriptome analysis.
  • Prevalent reliance of bacterioplankton on exogenous vitamin B1 and precursor availability.
  • Biogeochemical Cycling by a Low-Diversity Microbial Community in Deep Groundwater.
  • Towards high-throughput parallel imaging and single-cell transcriptomics of microbial eukaryotic plankton
  • Large-scale phylogenomics of aquatic bacteria reveal molecular mechanisms for adaptation to salinity
  • Microbial model communities reveal widespread auxotrophies in abundant bacteria
  • Introducing guidelines for publishing DNA-derived occurrence data through biodiversity data platforms
  • Large-scale phylogenomics of aquatic bacteria reveal molecular mechanisms for adaptation to salinity
  • Evaluating metagenomic assembly approaches for biome-specific gene catalogues
  • The Fennoscandian Shield deep terrestrial virosphere suggests slow motion ‘boom and burst’ cycles
  • Genome sequence of segmented filamentous bacteria present in the human intestine
  • Stationary and portable sequencing-based approaches for tracing wastewater contamination in urban stormwater systems
  • Reconstructing a hydrogen-driven microbial metabolic network in Opalinus Clay rock
  • ASV portal: an interface to DNA-based biodiversity data in the Living Atlas
  • The environment drives microbial trait variability in aquatic habitats
  • A comprehensive dataset on spatiotemporal variation of microbial plankton communities in the Baltic Sea
  • Ecologically coherent population structure of uncultivated bacterioplankton
  • Linking prokaryotic genome size variation to metabolic potential and environment
  • New chemical and microbial perspectives on vitamin B1 and vitamer dynamics of a coastal system
  • Marine snow as a habitat for microbial mercury methylators in the Baltic Sea
  • Revealing ecologically coherent population structure of uncultivated bacterioplankton with POGENOM
  • Distinct bacterial and protist plankton diversity dynamics uncovered through DNA-based monitoring in the Baltic Sea area
  • Temperature, sediment resuspension, and salinity drive the prevalence of Vibrio vulnificus in the coastal Baltic Sea
  • Identification of the missing links in prokaryotic pentose oxidation pathways: evidence for enzyme recruitment
  • Dual-genome primer design for construction of DNA microarrays
  • High archaeal diversity in Antarctic circumpolar deep waters
  • Community-wide analysis of microbial genome sequence signatures
  • Systematic design of 18S rRNA gene primers for determining eukaryotic diversity in microbial consortia
  • Rapid screening of complex DNA samples by single-molecule amplification and sequencing
  • The impact of Crohn's disease genes on healthy human gut microbiota: a pilot study
  • Three replication origins in Sulfolobus species: synchronous initiation of chromosome replication and asynchronous termination
  • 9 Functional Genomics of the Thermo-Acidophilic Archaeon Sulfolobus solfataricus
  • Disentangling seasonal bacterioplankton population dynamics by high-frequency sampling
  • DegePrime, a program for degenerate primer design for broad-taxonomic-range PCR in microbial ecology studies
  • Rolf Bernander (1956-2014): pioneer of the archaeal cell cycle
  • Functional tradeoffs underpin salinity-driven divergence in microbial community composition
  • Bacterial community composition in the water column of a lake formed by a former uranium open pit mine
  • A method for metagenomics of Helicobacter pylori from archived formalin-fixed gastric biopsies permitting longitudinal studies of carcinogenic risk
  • Global analysis of mRNA stability in the archaeon Sulfolobus
  • Titration-free 454 sequencing using Y adapters
  • Genome sequencing reveals a phage in Helicobacter pylori
  • Freshwater bacterioplankton richness in oligotrophic lakes depends on nutrient availability rather than on species-area relationships
  • Metagenomic de novo assembly of an aquatic representative of the verrucomicrobial class Spartobacteria
  • Active nitrogen-fixing heterotrophic bacteria at and below the chemocline of the central Baltic Sea
  • Which sequencing depth is sufficient to describe patterns in bacterial $α$- and $β$-diversity?
  • Nitrogenase gene amplicons from global marine surface waters are dominated by genes of non-cyanobacteria
  • Reply: To PMID 22153774
  • Replication-biased genome organisation in the crenarchaeon Sulfolobus
  • Titration-free massively parallel pyrosequencing using trace amounts of starting material
  • Functional analysis of the M.HpyAIV DNA methyltransferase of Helicobacter pylori
  • Transitions in bacterial communities along the 2000 km salinity gradient of the Baltic Sea
  • Virus population dynamics and acquired virus resistance in natural microbial communities
  • Novel primers for 16S rRNA-based archaeal community analyses in environmental samples
  • Community proteogenomics highlights microbial strain-variant protein expression within activated sludge performing enhanced biological phosphorus removal
  • Pyrosequencing reveals contrasting seasonal dynamics of taxa within Baltic Sea bacterioplankton communities
  • Decreased gut microbiota diversity, delayed Bacteroidetes colonisation and reduced Th1 responses in infants delivered by caesarean section
  • Low gut microbiota diversity in early infancy precedes asthma at school age
  • Binning metagenomic contigs by coverage and composition
  • Decreased gut microbiota diversity, delayed Bacteroidetes colonisation and reduced Th1 responses in infants delivered by caesarean section
  • A pyrosequencing study in twins shows that gastrointestinal microbial profiles vary with inflammatory bowel disease phenotypes
  • Comparative analysis of human gut microbiota by barcoded pyrosequencing
  • Low diversity of the gut microbiota in infants with atopic eczema
  • Short-term antibiotic treatment has differing long-term impacts on the human throat and gut microbiome
  • Experimental insights into the importance of aquatic bacterial community composition to the degradation of dissolved organic matter
  • Metagenome-assembled genomes uncover a global brackish microbiome
  • Phasing of single DNA molecules by massively parallel barcoding
  • A minimalistic microbial food web in an excavated deep subsurface clay rock
  • Whole genome sequencing identifies a novel species of the genus Capnocytophaga isolated from dog and cat bite wounds in humans
  • Experimental insights into the importance of aquatic bacterial community composition to the degradation of dissolved organic matter
  • Metagenome-assembled genomes uncover a global brackish microbiome
  • Diversity of Pico- to Mesoplankton Along the 2000 km Salinity Gradient of the Baltic Sea
  • Comparing the performance of functional versus taxonomic metagenomics for detecting ammonia disturbances in the biogas system

Anders Andersson's public data