Anders Andersson

Publications

• Active sulfur cycling in the terrestrial deep subsurface
• Evaluating metagenomic assembly approaches for biome-specific gene catalogues
• Short‐ and long‐read metabarcoding of the eukaryotic rRNA operon: Evaluation of primers and comparison to shotgun metagenomics sequencing
• Optimizing insect metabarcoding using replicated mock communities
• Linking prokaryotic genome size variation to metabolic potential and environment
• Optimizing insect metabarcoding using replicated mock communities
• Lake bacterioplankton dynamics over diurnal timescales
• Mineral Type Structures Soil Microbial Communities
• Metapopulation theory identifies biogeographical patterns among core and satellite marine bacteria scaling from tens to thousands of kilometers
• Multiscale patterns and drivers of arbuscular mycorrhizal fungal communities in the roots and root-associated soil of a wild perennial herb
• Stationary and portable sequencing-based approaches for tracing wastewater contamination in urban stormwater systems
• New mitochondrial primers for metabarcoding of insects, designed and evaluated using in silico methods
• Coupling biogeochemical process rates and metagenomic blueprints of coastal bacterial assemblages in the context of environmental change
• Genomic analysis reveals the presence of a class D beta-lactamase with broad substrate specificity in animal bite associated Capnocytophaga species
• Potential for hydrogen-oxidizing chemolithoautotrophic and diazotrophic populations to initiate biofilm formation in oligotrophic, deep terrestrial subsurface waters
• Phylogenetic Signals of Salinity and Season in Bacterial Community Composition Across the Salinity Gradient of the Baltic Sea
• Colonization and Succession within the Human Gut Microbiome by Archaea, Bacteria, and Microeukaryotes during the First Year of Life
• BARM and BalticMicrobeDB, a reference metagenome and interface to meta-omic data for the Baltic Sea
• Analysing Microbial Community Composition through Amplicon Sequencing: From Sampling to Hypothesis Testing
• Improvement of identification methods for honeybee specific Lactic Acid Bacteria; future approaches
• Reconstructing a hydrogen-driven microbial metabolic network in Opalinus Clay rock
• Ninety-nine de novo assembled genomes from the moose (Alces alces) rumen microbiome provide new insights into microbial plant biomass degradation
• Diversity of Pico- to Mesoplankton along the 2000 km Salinity Gradient of the Baltic Sea
• Periodontal Health and Oral Microbiota in Patients with Rheumatoid Arthritis.
• Atmospheric Deposition Impact on Bacterial Community Composition in the NW Mediterranean.
• Genomes from uncultivated prokaryotes: a comparison of metagenome-assembled and single-amplified genomes.
• Birth mode is associated with earliest strain-conferred gut microbiome functions and immunostimulatory potential.
• AFISsys - An autonomous instrument for the preservation of brackish water samples for microbial metatranscriptome analysis.
• Prevalent reliance of bacterioplankton on exogenous vitamin B1 and precursor availability.
• Biogeochemical Cycling by a Low-Diversity Microbial Community in Deep Groundwater.
• Towards high-throughput parallel imaging and single-cell transcriptomics of microbial eukaryotic plankton
• Large-scale phylogenomics of aquatic bacteria reveal molecular mechanisms for adaptation to salinity
• Microbial model communities reveal widespread auxotrophies in abundant bacteria
• Introducing guidelines for publishing DNA-derived occurrence data through biodiversity data platforms
• Large-scale phylogenomics of aquatic bacteria reveal molecular mechanisms for adaptation to salinity
• Evaluating metagenomic assembly approaches for biome-specific gene catalogues
• The Fennoscandian Shield deep terrestrial virosphere suggests slow motion ‘boom and burst’ cycles
• Genome sequence of segmented filamentous bacteria present in the human intestine
• Stationary and portable sequencing-based approaches for tracing wastewater contamination in urban stormwater systems
• Reconstructing a hydrogen-driven microbial metabolic network in Opalinus Clay rock
• ASV portal: an interface to DNA-based biodiversity data in the Living Atlas
• The environment drives microbial trait variability in aquatic habitats
• A comprehensive dataset on spatiotemporal variation of microbial plankton communities in the Baltic Sea
• Ecologically coherent population structure of uncultivated bacterioplankton
• Linking prokaryotic genome size variation to metabolic potential and environment
• New chemical and microbial perspectives on vitamin B1 and vitamer dynamics of a coastal system
• Marine snow as a habitat for microbial mercury methylators in the Baltic Sea
• Revealing ecologically coherent population structure of uncultivated bacterioplankton with POGENOM
• Distinct bacterial and protist plankton diversity dynamics uncovered through DNA-based monitoring in the Baltic Sea area
• Temperature, sediment resuspension, and salinity drive the prevalence of Vibrio vulnificus in the coastal Baltic Sea
• Identification of the missing links in prokaryotic pentose oxidation pathways: evidence for enzyme recruitment
• Dual-genome primer design for construction of DNA microarrays
• High archaeal diversity in Antarctic circumpolar deep waters
• Community-wide analysis of microbial genome sequence signatures
• Systematic design of 18S rRNA gene primers for determining eukaryotic diversity in microbial consortia
• Rapid screening of complex DNA samples by single-molecule amplification and sequencing
• The impact of Crohn's disease genes on healthy human gut microbiota: a pilot study
• Three replication origins in Sulfolobus species: synchronous initiation of chromosome replication and asynchronous termination
• 9 Functional Genomics of the Thermo-Acidophilic Archaeon Sulfolobus solfataricus
• Disentangling seasonal bacterioplankton population dynamics by high-frequency sampling
• DegePrime, a program for degenerate primer design for broad-taxonomic-range PCR in microbial ecology studies
• Rolf Bernander (1956-2014): pioneer of the archaeal cell cycle
• Functional tradeoffs underpin salinity-driven divergence in microbial community composition
• Bacterial community composition in the water column of a lake formed by a former uranium open pit mine
• A method for metagenomics of Helicobacter pylori from archived formalin-fixed gastric biopsies permitting longitudinal studies of carcinogenic risk
• Global analysis of mRNA stability in the archaeon Sulfolobus
• Titration-free 454 sequencing using Y adapters
• Genome sequencing reveals a phage in Helicobacter pylori
• Freshwater bacterioplankton richness in oligotrophic lakes depends on nutrient availability rather than on species-area relationships
• Metagenomic de novo assembly of an aquatic representative of the verrucomicrobial class Spartobacteria
• Active nitrogen-fixing heterotrophic bacteria at and below the chemocline of the central Baltic Sea
• Which sequencing depth is sufficient to describe patterns in bacterial $α$- and $β$-diversity?
• Nitrogenase gene amplicons from global marine surface waters are dominated by genes of non-cyanobacteria
• Reply: To PMID 22153774
• Replication-biased genome organisation in the crenarchaeon Sulfolobus
• Titration-free massively parallel pyrosequencing using trace amounts of starting material
• Functional analysis of the M.HpyAIV DNA methyltransferase of Helicobacter pylori
• Transitions in bacterial communities along the 2000 km salinity gradient of the Baltic Sea
• Virus population dynamics and acquired virus resistance in natural microbial communities
• Novel primers for 16S rRNA-based archaeal community analyses in environmental samples
• Community proteogenomics highlights microbial strain-variant protein expression within activated sludge performing enhanced biological phosphorus removal
• Pyrosequencing reveals contrasting seasonal dynamics of taxa within Baltic Sea bacterioplankton communities
• Decreased gut microbiota diversity, delayed Bacteroidetes colonisation and reduced Th1 responses in infants delivered by caesarean section
• Low gut microbiota diversity in early infancy precedes asthma at school age
• Binning metagenomic contigs by coverage and composition
• Decreased gut microbiota diversity, delayed Bacteroidetes colonisation and reduced Th1 responses in infants delivered by caesarean section
• A pyrosequencing study in twins shows that gastrointestinal microbial profiles vary with inflammatory bowel disease phenotypes
• Comparative analysis of human gut microbiota by barcoded pyrosequencing
• Low diversity of the gut microbiota in infants with atopic eczema
• Short-term antibiotic treatment has differing long-term impacts on the human throat and gut microbiome
• Experimental insights into the importance of aquatic bacterial community composition to the degradation of dissolved organic matter
• Metagenome-assembled genomes uncover a global brackish microbiome
• Phasing of single DNA molecules by massively parallel barcoding
• A minimalistic microbial food web in an excavated deep subsurface clay rock
• Whole genome sequencing identifies a novel species of the genus Capnocytophaga isolated from dog and cat bite wounds in humans
• Experimental insights into the importance of aquatic bacterial community composition to the degradation of dissolved organic matter
• Metagenome-assembled genomes uncover a global brackish microbiome
• Diversity of Pico- to Mesoplankton Along the 2000 km Salinity Gradient of the Baltic Sea
• Comparing the performance of functional versus taxonomic metagenomics for detecting ammonia disturbances in the biogas system