Swedish Reference Genome Portal: A service facilitating access and discovery of genome data studied in Sweden
presentation
posted on 2025-05-27, 06:35 authored by Daniel BrinkDaniel Brink, Angela P. Fuentes-PardoAngela P. Fuentes-Pardo, Rory Crean, Quentin Ågren, Henrik Lantz, Hanna KultimaHanna Kultima, Bengt Persson, Johan RungJohan RungPresentation given during the course "Best Practices for Reference Genome Generation", held on 2025-04-28 at Uppsala University. The event was organised by the SciLifeLab Planetary Biology Capability.
The course covered essential topics ranging from project planning and sample collection to sequencing, data processing, data mobilization, and deposition in open repositories.
Topics and Instructors:
- Nagoya Protocol & ABS requirements: Niklas Wahlberg (LU), Sebastian Bromander (SLU), Johan DIxelius (SLU)
- Biosafety, import permits: Henrik Gradstedt (UU)
- Sampling and vouchering: Paco Cardenas (Uppsala Museum of Evolution)
- DNA extractions and sequencing: Olga Vinnere Pettersson (SciLifeLab Planetary Biology Capability)
- Bioinformatic pipelines, metadata and FAIR (SciLifeLab-NBIS)
- Swedish Reference Genome Portal: Daniel Brink and Angela Fuentes Pardo (SciLifeLab Data Centre)
- Data mobilization: Veronica Johansson (Swedish Biodiversity Data Infrastructure)
Funding
SciLifeLab and Wallenberg Research Program for Data-Driven Life Science (DDLS)
Swedish Foundation for Strategic Research (SSF)
History
Publisher
Uppsala UniversityContact email
datacentre@scilifelab.seSciLifeLab acknowledgement
- SciLifeLab Data Centre
- Bioinformatics platform (NBIS)
