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KrakenUniq database based on full NCBI NT from December 2020

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posted on 2022-09-30, 07:31 authored by Claudio MirabelloClaudio Mirabello, Nikolay OskolkovNikolay Oskolkov

This is a KrakenUniq database built using full NCBI non-redundant NT / NR records from December 2020 that includes all microbial, verterbrate, non-verterbrate and plant organisms.


The database was built by Nikolay Oskolkov, Lund University, Sweden, within the NBIS SciLifeLab long-term support project, PI Anders Götherström, Centre for Palaeogenetics, Stockholm, Sweden.


The database was build using KrakenUniq version 0.5.8.


The database was built with the following command line:


krakenuniq-build --db 20200827-003525_nt --kmer-len 31 --threads 80 --taxids-for-genomes --taxids-for-sequences


Funding

Stockholms universitet, Wallenberg Advanced Bioinformatics Infrastructure, WABIBeviljat anslag: 68 miljoner kronor i fortsättningsanslag

Knut and Alice Wallenberg Foundation

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NBIS

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