SciLifeLab
Browse

KrakenUniq database based on full NCBI NT from December 2020

Download all (2.4 TB)
Version 2 2024-07-09, 14:17
Version 1 2022-09-30, 07:31
online resource
posted on 2024-07-09, 14:17 authored by Claudio MirabelloClaudio Mirabello, Nikolay OskolkovNikolay Oskolkov

This is a KrakenUniq database built using full NCBI non-redundant NT / NR records from December 2020 that includes all microbial, verterbrate, non-verterbrate and plant organisms.


The database was built by Nikolay Oskolkov, Lund University, Sweden, within the NBIS SciLifeLab long-term support project, PI Anders Götherström, Centre for Palaeogenetics, Stockholm, Sweden.


The database was build using KrakenUniq version 0.5.8.


The database was built with the following command line:


krakenuniq-build --db 20200827-003525_nt --kmer-len 31 --threads 80 --taxids-for-genomes --taxids-for-sequences


Funding

Stockholms universitet, Wallenberg Advanced Bioinformatics Infrastructure, WABIBeviljat anslag: 68 miljoner kronor i fortsättningsanslag

Knut and Alice Wallenberg Foundation

Find out more...

History

Publisher

NBIS

Usage metrics

    National Bioinformatics Infrastructure Sweden (NBIS)

    Licence

    Exports

    RefWorks
    BibTeX
    Ref. manager
    Endnote
    DataCite
    NLM
    DC