.GZ

library.fna.1.bt2l.gz (63.71 GB)

.BT2L

library.fna.2.bt2l (159.96 GB)

.GZ

library.fna.3.bt2l.gz (1.44 GB)

.GZ

library.fna.4.bt2l.gz (69.49 GB)

.GZ

library.fna.gz (89.85 GB)

.GZ

library.fna.masked.gz (0.04 kB)

.GZ

library.fna.rev.1.bt2l.gz (63.72 GB)

.BT2L

library.fna.rev.2.bt2l (159.96 GB)

.GZ

prelim_map.txt.gz (372.03 MB)

.ACCESSION2TAXID

nucl_gb.accession2taxid (9.28 GB)

.ORIG

seqid2taxid.map.orig (1.19 GB)

TEXT

README.txt (0.84 kB)

TEXT

library.fna.fai (2.26 GB)

TEXT

MANIFEST.txt (0.44 kB)

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Bowtie2 index for full NCBI NT database, January 2021

Version 3 2024-07-11, 07:54

Version 2 2022-11-14, 13:08

Version 1 2022-09-19, 10:54

online resource

posted on 2024-07-11, 07:54 authored by Nikolay OskolkovNikolay Oskolkov

This is a Bowtie2 index built using full NCBI NT database from January 2021 https://ftp.ncbi.nlm.nih.gov/blast/db/FASTA/nt.gz that includes all microbial, verterbrate, non-verterbrate and plant organisms. The index can be used for competative alignments of DNA sequences from metagenomic samples. The index was built by Nikolay Oskolkov, Lund University, Sweden, within the NBIS SciLifeLab long-term support project, PI Anders Götherström, Centre for Palaeogenetics, Stockholm, Sweden. The index was build using Bowtie2 version 2.3.5.1 using a computer node with 1 TB of RAM on Uppmax SUPR /SNIC HPC cluster.