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Linum tenue - Tajima's D estimates per population

Version 2 2024-10-30, 15:36
Version 1 2024-09-05, 07:23
dataset
posted on 2024-10-30, 15:36 authored by Zoe PostelZoe Postel, Marco FracassettiMarco Fracassetti, Tanja SlotteTanja Slotte, Juanita Gutiérrez-Valencia, Panagiotis-Ioannis Zervakis, Ignas Bunikis, Lucile Soler, Aleksandra Losvik, Aurelie Desamore, P. William HughesP. William Hughes, Sara Mehrabi, Benjamin LaenenBenjamin Laenen, Olga Vinnere Pettersson, Mohammed Abdelaziz

Whole genome Tajima's D estimates for individuals of all population of L. tenue per 100 kb windows.

It is part of this article: Gutiérrez-Valencia, J., Zervakis, P. I., Postel, Z., Fracassetti, M., Losvik, A., Mehrabi, S., ... & Slotte, T. (2024). Genetic causes and genomic consequences of breakdown of distyly in Linum trigynum. Molecular Biology and Evolution, msae087. https://doi.org/10.1093/molbev/msae087

Estimations were done using vcftools v.0.1.16 on a filtered vcf file.

File's descriptions:

  • CHROM = the chromosome's name
  • START = the start position of the 100 kb window
  • END = the end position of the 100 kb window
  • TajimaD = the estimated value of Tajima's D for that window

List of the populations:

  • population 06
  • population 08
  • population 17
  • population 21
  • population 23
  • population 26
  • population 32
  • population 34


Funding

The role of structural variation for the origin and evolution of a classic supergene

Swedish Research Council

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Supergene evolution in a classic plant system - bringing the study of distyly into the genomic era

European Research Council

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History

Publisher

Stockholm University

Contact email

zoe.postel@su.se

SciLifeLab acknowledgement

  • Bioinformatics platform (NBIS)

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    Tanja Slotte research group

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