TEXT
hg19.with.mt.fasta (2.94 GB)
TEXT
hg19.refGene.gtf (251.85 MB)
.AMB
hg19.with.mt.amb (6.5 kB)
.ANN
hg19.with.mt.ann (0.92 kB)
.BWT
hg19.with.mt.bwt (2.88 GB)
TEXT
hg19.with.mt.fasta.fai (0.77 kB)
.PAC
hg19.with.mt.pac (738.07 MB)
.SA
hg19.with.mt.sa (1.44 GB)
TEXT
human_v102.tar.gz.aa (4.39 GB)
.AB
human_v102.tar.gz.ab (4.39 GB)
.AC
human_v102.tar.gz.ac (4.39 GB)
.AD
human_v102.tar.gz.ad (4.13 GB)
.GZ
small_exac_common_3.hg19.vcf.gz (1.1 MB)
.TBI
small_exac_common_3.hg19.vcf.gz.tbi (232.65 kB)
.GZ
star_v2.7.10a_hg19_index.tar.gz (24.1 GB)
.GZ
homo_sapiens_refseq_vep_105_GRCh37.tar.gz (12.71 GB)
TEXT
hg19.with.mt.fasta.dict (3.27 kB)
.GZ
GRCh37_gencode_v19_CTAT_lib_Mar012021.plug-n-play.tar.gz (28.6 GB)
TEXT
MANIFEST_references_v0.7.0.txt (1.13 kB)
TEXT
README_references_v0.7.0.txt (2.5 kB)
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Twist Solid GMS560 v0.7.0 references
Version 2 2023-08-23, 14:08
Version 1 2023-08-22, 12:55
dataset
posted on 2023-08-23, 14:08 authored by Jonas AlmlöfJonas AlmlöfThe data included here are part of a collection of different types of reference data used in the bioinformatic analysis pipeline called Twist Solid GMS560. The pipeline is based on the Hydra-genetics framework and analyses NGS short read data from the GMS560 Twist panel which is used on solid cancer samples.
The data in this specific item include general publicly available reference files used in the pipeline by many different programs. Downloading data from here will ensure compatible and correct versions for v0.7.0 of the pipeline.
