DATASET
artifact_panel_nextseq_36.tsv (36.76 MB)
DATASET
artifact_panel_novaseq_13.tsv (6.53 MB)
DATASET
background_panel_nextseq_noUmea_27_dp500_af015.tsv (129.85 MB)
DATASET
background_panel_novaseq_13_dp500_af015.tsv (141.55 MB)
.CNN
cnvkit_nextseq_27_HRD.cnn (1.78 MB)
.CNN
cnvkit_nextseq_36.cnn (3.03 MB)
.CNN
cnvkit_novaseq_13.cnn (3.03 MB)
.HDF5
gatk_cnv_nextseq_36.hdf5 (5.67 MB)
.HDF5
gatk_cnv_novaseq_13.hdf5 (2.93 MB)
.RDS
mapping_bias_nextseq_27_hg19.rds (6.36 MB)
.LIST_BASELINE
Msisensor_pro_reference_nextseq_36.list_baseline (251.25 kB)
.LIST_BASELINE
Msisensor_pro_reference_novaseq_13.list_baseline (482.51 kB)
.RDS
normalDB_nextseq_27_hg19.rds (50.84 MB)
TEXT
all_TN_292_svdb_0.8_20220505.vcf (14.35 MB)
.CNN
cnvkit_novaseq_13_HRD.cnn (1.78 MB)
TEXT
README_references_panel_of_normal.txt (2.5 kB)
TEXT
MANIFEST_references_panel_of_normal.txt (1.12 kB)
1/0
Twist Solid GMS560 v0.6.1 panel of normals
The data included here are part of a collection of different types of reference data used in the bioinformatic analysis pipeline called Twist Solid GMS560. The pipeline is based on the Hydra-genetics framework and analyses NGS short read data from the GMS560 Twist panel which is used on solid cancer samples.
The data in this specific item include panel of normals and artifact filer files generated for the Twist GMS560 panel. Panel of normals and artifacts are specific to panel used and sequencing machine. Programs using these files include MSIsensor-Pro, GATK CNV, CNVkit, SVDB, PureCN, and small variant filtering.
