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DMP_contact_prediction_benchmark_set.zip (422.91 MB)
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DMP_contact_prediction_double_unit_benchmark_set.zip (36.51 MB)
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DMP_contact_prediction_single_unit_benchmark_set.zip (8.01 MB)
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DMP_models_single_unit_benchmark_set.zip (6.04 MB)
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DMP_models_double_unit_benchmark_set.zip (11.65 MB)
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DMP_models_benchmark_set.zip (36.59 MB)
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PconsC4_models_single_unit_benchmark.zip (6.01 MB)
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PconsC4_models_double_unit_benchmark.zip (11.64 MB)
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PconsC4_models_benchmark_set.zip (36.97 MB)
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PconsC4_contact_prediction_single_unit_benchmark_set.zip (3.88 MB)
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MSA_benchmark_set.zip (3.13 GB)
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PconsC4_contact_prediction_double_unit_benchmark_set.zip (18.5 MB)
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PconsC4_contact_prediction_benchmark_set.zip (223.08 MB)
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MSA_double_unit_benchmark_set.zip (2 GB)
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MSA_single_unit_benchmark_set.zip (376.83 MB)
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MSA_unresolved_PFAM_families.zip (63.95 MB)
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PconsC4_contact_prediction_unresolved_PFAM_families.zip (6.66 MB)
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PconsC4_models_unresolved_PFAM_families.zip (1.48 MB)
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DMP_models_unresolved_PFAM_families.zip (1.61 MB)
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DMP_contact_prediction_unresolved_PFAM_families.zip (12.34 MB)
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Repeats Proteins contact prediction based modelling datasets
Version 2 2021-01-07, 21:43
Version 1 2020-08-04, 10:01
dataset
posted on 2021-01-07, 21:43 authored by Arne ElofssonArne Elofsson, Arne ElofssonDatasets of repeats proteins model obtained by contact prediction based modelling.
The multiple sequence alignments were generate using HHblits with an E-value cutoff of 0.001 against the Uniclust30_2017_04 database.
Protein contacts were calculated with PconsC4 and Deep Meta Psicov were used as input for Confold. The modelling was run using the top scoring 1.5 L contracts where L is the length of the modelled regions and the two-stage modelling.
Protein contacts were calculated with PconsC4 and Deep Meta Psicov were used as input for Confold. The modelling was run using the top scoring 1.5 L contracts where L is the length of the modelled regions and the two-stage modelling.
For trRosetta the angles and distances were calculated with trRosetta and folded with pyRosetta.
