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Repeats Proteins contact prediction based modelling datasets

Version 2 2021-01-07, 21:43
Version 1 2020-08-04, 10:01
posted on 2021-01-07, 21:43 authored by Arne ElofssonArne Elofsson, Arne Elofsson
Datasets of repeats proteins model obtained by contact prediction based modelling.
The multiple sequence alignments were generate using HHblits with an E-value cutoff of 0.001 against the Uniclust30_2017_04 database.
Protein contacts were calculated with PconsC4 and Deep Meta Psicov were used as input for Confold. The modelling was run using the top scoring 1.5 L contracts where L is the length of the modelled regions and the two-stage modelling.
For trRosetta the angles and distances were calculated with trRosetta and folded with pyRosetta.


Grant No. 2016-03798 from VR (Swedish national research foundation)