Repeat annotation of <i>Linum trigynum</i>

<p dir="ltr">The file contains the annotation fo the repetitive regions in *Linum trigynum*. </p><p dir="ltr">The detection of Repeat has been done with [RepeatMasker/RepeatModeler](https://www.repeatmasker.org/) using a custom repeat library. </p><p dir="ltr">The genome has been deposited to [ENA](https://www.ebi.ac.uk/ena/browser/home) with the accession id: GCA_964030455 (project PRJEB67577). </p><p dir="ltr">It is part of this article: Gutiérrez-Valencia, J., Zervakis, P. I., Postel, Z., Fracassetti, M., Losvik, A., Mehrabi, S., ... & Slotte, T. (2024). Genetic causes and genomic consequences of breakdown of distyly in Linum trigynum. Molecular Biology and Evolution, msae087. https://doi.org/10.1093/molbev/msae087</p><p dir="ltr"><br></p><p dir="ltr">The file is in BED format converted with [BEDOPS](https://bedops.readthedocs.io/en/latest/content/reference/file-management/conversion/rmsk2bed.html). The fourth (Repeat class) and eleventh (Repeat name) columns have been reversed to highlight the Repeat name in the visualization. </p><p dir="ltr"><br></p><p dir="ltr">Query sequence 1 chromosome</p><p dir="ltr">Query start 2 start</p><p dir="ltr">Query end 3 stop</p><p dir="ltr">Repeat class 4 id</p><p dir="ltr">Smith-Waterman score 5 score</p><p dir="ltr">Strand 6 strand</p><p dir="ltr">Percentage, substitutions 7 </p><p dir="ltr">Percentage, deleted bases 8 </p><p dir="ltr">Percentage, inserted bases 9 </p><p dir="ltr">Bases in query, past match 10 </p><p dir="ltr">Repeat name 11 </p><p dir="ltr">Bases in complement of the repeat consensus sequence 12 </p><p dir="ltr">Match start 13 </p><p dir="ltr">Match end 14 </p><p dir="ltr">Unique ID 15 </p><p dir="ltr">Higher-scoring match (optional) 16</p>