Repeat annotation of Linum trigynum

The file contains the annotation fo the repetitive regions in *Linum trigynum*.

The detection of Repeat has been done with [RepeatMasker/RepeatModeler](https://www.repeatmasker.org/) using a custom repeat library.

The genome has been deposited to [ENA](https://www.ebi.ac.uk/ena/browser/home) with the accession id: GCA_964030455 (project PRJEB67577).

It is part of this article: Gutiérrez-Valencia, J., Zervakis, P. I., Postel, Z., Fracassetti, M., Losvik, A., Mehrabi, S., ... & Slotte, T. (2024). Genetic causes and genomic consequences of breakdown of distyly in Linum trigynum. Molecular Biology and Evolution, msae087. https://doi.org/10.1093/molbev/msae087

The file is in BED format converted with [BEDOPS](https://bedops.readthedocs.io/en/latest/content/reference/file-management/conversion/rmsk2bed.html). The fourth (Repeat class) and eleventh (Repeat name) columns have been reversed to highlight the Repeat name in the visualization.

Query sequence 1 chromosome

Query start 2 start

Query end 3 stop

Repeat class 4 id

Smith-Waterman score 5 score

Strand 6 strand

Percentage, substitutions 7

Percentage, deleted bases 8

Percentage, inserted bases 9

Bases in query, past match 10

Repeat name 11

Bases in complement of the repeat consensus sequence 12

Match start 13

Match end 14

Unique ID 15

Higher-scoring match (optional) 16