Pug dog thoracolumbar myelopathy

<p>The datasets consist of genotype data from pug dogs in plink format used for the study <strong>Multiple genetic loci associated with pug dog thoracolumbar myelopathy.</strong></p> <p><br></p> <p>PDM plink files are QC:ed (--maf 0.01 --geno 0.05 --mind 0.05 and --hwe 1e-10) and relatedness filtered at a threshold of 0.177, including 89 dogs of which 51 were affected by pug dog thoracolumbar myelopathy and 38 were unaffected controls.</p> <p><br></p> <p>Genotyping technique is indicated in the FIID column, with GC indicating Gencove low-pass sequenced dogs using  </p> <p>Pipeline Dog low pass v2 with 676 dogs in the reference panel and GW indicating genotyped dogs using  </p> <p>Illumina 230k CanineHD BeadChip.</p> <p><br></p> <p>Chromosomal coordinates are based on the dog CanFam3.1 genome assembly.</p>