MINUTE-ChIP example data
This collection contains an example MINUTE-ChIP dataset to run minute pipeline on, provided as supporting material to help users understand the results of a MINUTE-ChIP experiment from raw data to a primary analysis that yields the relevant files for downstream analysis along with summarized QC indicators.
Example primary non-demultiplexed FASTQ files provided here were used to generate GSM5493452-GSM5493463 (H3K27m3) and GSM5823907-GSM5823918 (Input), deposited on GEO with the minute pipeline all together under series GSE181241.
For more information about MINUTE-ChIP, you can check the publication relevant to this dataset:
If you want more information about the minute pipeline, there is a public biorXiv and a GitHub repository and official documentation.
Funding
Stiftelsen för Strategisk Forskning (FFL7)
Knut och Alice Wallenbergs Stiftelse, Sweden
KI Research Foundation Grants (2022-01826)
The Ragnar Söderbergs Stiftelse, Sweden
Dynamic interplay of Polycomb complexes in establishing and maintaining cellular memory
Swedish Research Council
Find out more...NAISS Storage projects: SNIC 2022/6-14, NAISS 2023/6-19, NAISS 2024/6-20
NAISS Compute projects: SNIC 2020/15-9, NAISS 2023/22-84, NAISS 2024/22-108
History
Publisher
Karolinska InstitutetContact email
carmen.navarro@scilifelab.seSciLifeLab acknowledgement
- Bioinformatics platform (NBIS)