Growth analysis of Apilactobacillus kunkeei strains

Growth analysis of Apilactobacillus kunkeei strains used for manuscript "Dyrhage et al. Genome Evolution of a Symbiont Population for Pathogen Defence in Honeybees, Genome Biology and Evolution, 2022."

The dataset contains the raw data from the Bioscreen C instrument, the column names and the RMarkdown scripts for analysis of the individual growth experiments. A summary file (EXP-20-BQ4058_growthanalysis.summary.Rmd) merges the results from the individual experiments to produce the final summary of growth kinetics for all the tested strains.

*growthanalysis.csv: raw growthdata from Bioscreen C

*growthanalysis.colnames.csv: sample IDs used in the corresponding *Akunkeei.Rmd scripts to associate plate position with the sample.

*Akunkeei.Rmd: RMarkdown script to analyze the growthdata using the growthcurver package

EXP-20-BQ4058_growthanalysis.summary.Rmd: RMarkdown script to combine the collected growthdata and to generate the results that are part of "Dyrhage et al. Genome Evolution of a Symbiont Population for Pathogen Defence in Honeybees, Genome Biology and Evolution, 2022."