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Growth analysis of Apilactobacillus kunkeei strains

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posted on 04.10.2022, 10:54 authored by Christian SeegerChristian Seeger, Karl DyrhageKarl Dyrhage

Growth analysis of Apilactobacillus kunkeei strains used for manuscript "Dyrhage et al. Genome Evolution of a Symbiont Population for Pathogen Defence in Honeybees, Genome Biology and Evolution, 2022."


The dataset contains the raw data from the Bioscreen C instrument, the column names and the RMarkdown scripts for analysis of the individual growth experiments. A summary file (EXP-20-BQ4058_growthanalysis.summary.Rmd) merges the results from the individual experiments to produce the final summary of growth kinetics for all the tested strains.


*growthanalysis.csv: raw growthdata from Bioscreen C

*growthanalysis.colnames.csv: sample IDs used in the corresponding *Akunkeei.Rmd scripts to associate plate position with the sample.

*Akunkeei.Rmd: RMarkdown script to analyze the growthdata using the growthcurver package

EXP-20-BQ4058_growthanalysis.summary.Rmd: RMarkdown script to combine the collected growthdata and to generate the results that are part of "Dyrhage et al. Genome Evolution of a Symbiont Population for Pathogen Defence in Honeybees, Genome Biology and Evolution, 2022."

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Uppsala University