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Genotypes and population allele frequencies in Atlantic and Pacific herring samples

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posted on 2023-04-12, 06:07 authored by Mats PetterssonMats Pettersson, Leif Andersson, Angela Fuentes-Pardo, Christina Rochus, Huijuan Bi, Erik Enbody, Risto Väniölä

Individual genotypes, sample IDs and pool-wise allele freqeuncies used in "A long-standing hybrid population between Pacific and Atlantic herring in a subarctic fjord of Norway" (GBE-230119). The data are stored as tab-separated, gzipped textfiles. For the pool frequencies, sample names are in the header. For the individuals, the genotypes for each snp are stored as a single string with out spaces or tabs. The order is the indicated in the sample file, and each individual is represente by two characters (ie haplotype 1 and haplotype 2). Thus, the first and second character represents the first individual, the third and fourth cahncater the second individual et c.

Funding

The genetics of biodiversity

Swedish Research Council

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KAW2016.0153

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Uppsala University

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    Leif Andersson Lab

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