Gene annotation of Linum trigynum

Version 2 2024-08-29, 15:22

Version 1 2024-05-13, 08:32

dataset

posted on 2024-05-13, 08:32 authored by Marco FracassettiMarco Fracassetti, Tanja SlotteTanja Slotte, Juanita Gutierrez-Valencia, Panagiotis-Ioannis Zervakis, Zoé Postel, Ignas Bunikis, Lucile Soler, Aleksandra Losvik, Aurelie Desamore, P. William HughesP. William Hughes, Sara Mehrabi, Benjamin LaenenBenjamin Laenen, Mohamed Abdelaziz, Olga Vinnere Pettersson, Juan Arroyo

The file contains the gene annotation of Linum trigynum genome.

The genome has been deposited to ENA (https://www.ebi.ac.uk/ena/browser/home) with the accession id: GCA_964030455 (Project PRJEB67577). See link below.

The gene annotation has been done with TSEBRA (https://github.com/Gaius-Augustus/TSEBRA). The genes contained in the S-locus region has been manually annotated using StringTie (https://ccb.jhu.edu/software/stringtie/) and TransDecoder (https://github.com/TransDecoder/).

It is part of this article: Gutiérrez-Valencia, J., Zervakis, P. I., Postel, Z., Fracassetti, M., Losvik, A., Mehrabi, S., ... & Slotte, T. (2024). Genetic causes and genomic consequences of breakdown of distyly in Linum trigynum. Molecular Biology and Evolution, msae087. https://doi.org/10.1093/molbev/msae087