Gene annotation of Linum tenue

dataset

posted on 2024-05-13, 08:31 authored by Marco FracassettiMarco Fracassetti, Tanja SlotteTanja Slotte, Juanita Gutiérrez-Valencia, Panagiotis-Ioannis Zervakis, Zoé Postel, Aleksandra Losvik, Sara Mehrabi, Ignas Bunikis, Lucile Soler, P. William HughesP. William Hughes, Aurélie DésamoréAurélie Désamoré, Benjamin LaenenBenjamin Laenen, Mohamed Abdelaziz, Olga Vinnere Pettersson, Juan Arroyo

The file contains the gene annotation of Linum tenue genome.

The genome has been deposited to ENA with the accession id: GCA_946122785 (Project PRJEB52918). See link below.

The gene annotation has been done with MAKER (https://www.yandell-lab.org/software/maker.html) by NBIS. The genes contained in the S-locus region has been manually annotated using StringTie (https://ccb.jhu.edu/software/stringtie/) and TransDecoder (https://github.com/TransDecoder/).

It is part of this article: Gutiérrez-Valencia, J., Zervakis, P. I., Postel, Z., Fracassetti, M., Losvik, A., Mehrabi, S., ... & Slotte, T. (2024). Genetic causes and genomic consequences of breakdown of distyly in Linum trigynum. Molecular Biology and Evolution, msae087. https://doi.org/10.1093/molbev/msae087