Gene annotation of <i>Linum tenue</i>
dataset
posted on 2024-05-13, 08:31 authored by Marco FracassettiMarco Fracassetti, Tanja SlotteTanja Slotte, Juanita Gutiérrez-Valencia, Panagiotis-Ioannis Zervakis, Zoé Postel, Aleksandra Losvik, Sara Mehrabi, Ignas Bunikis, Lucile Soler, P. William HughesP. William Hughes, Aurélie DésamoréAurélie Désamoré, Benjamin LaenenBenjamin Laenen, Mohamed Abdelaziz, Olga Vinnere Pettersson, Juan Arroyo<div>The file contains the gene annotation of <em>Linum tenue</em> genome.</div>
<p>The genome has been deposited to ENA with the accession id: GCA_946122785 (Project PRJEB52918). See link below.</p>
<p>The gene annotation has been done with MAKER (https://www.yandell-lab.org/software/maker.html) by NBIS. The genes contained in the S-locus region has been manually annotated using StringTie (https://ccb.jhu.edu/software/stringtie/) and TransDecoder (https://github.com/TransDecoder/).</p>
<p>It is part of this article: Gutiérrez-Valencia, J., Zervakis, P. I., Postel, Z., Fracassetti, M., Losvik, A., Mehrabi, S., ... & Slotte, T. (2024). Genetic causes and genomic consequences of breakdown of distyly in Linum trigynum. Molecular Biology and Evolution, msae087. https://doi.org/10.1093/molbev/msae087</p>
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Funding
Supergene evolution in a classic plant system - bringing the study of distyly into the genomic era
European Research Council
Find out more...The role of structural variation for the origin and evolution of a classic supergene
Swedish Research Council
Find out more...History
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Publisher
Stockholm UniversityContact email
marco.fracassetti@su.seSciLifeLab acknowledgement
- Bioinformatics platform (NBIS)
- National Genomics Infrastructure unit
