Dataset for "Limits and potential of combined folding and docking using PconsDock"

dataset

posted on 2021-08-09, 13:35 authored by Arne ElofssonArne Elofsson, Gabriele Pozzati, Wensi Zhu, Claudio BassotClaudio Bassot, John LambJohn Lamb, Petras Kundrotas

All scripts for predictions and analysis are available from https://github.com/ElofssonLab/bioinfo-toolbox/trRosetta/

Details for each run are available from https://github.com/ElofssonLab/bioinfo-toolbox/benchmark5/benchmark4.3/.

All models joined alignments, and evaluation results are available from a figshare repository[44].

The data is organized as follows

1) One diretora (N*/ as well as ./) contains all the results and data for one set of parameters

2) In each directory the following subdirectories are included

2a) seq/ (all sequences)

2b) pdb/ (all orginal pdb files)

2c) dimer/ all merged msa files

2d) pymodel/ all models generated and the measuremenst (in csv files) to evalute their performance.

3) In the director Figures/ all figures, scripts to generat them as well as summary of all predictions in a csv files is included

Funding

Swedish Research Council

Stockholm University