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Dataset for "Limits and potential of combined folding and docking using PconsDock"

Version 2 2021-08-09, 13:35
Version 1 2021-05-23, 14:09
dataset
posted on 2021-08-09, 13:35 authored by Arne ElofssonArne Elofsson, Gabriele Pozzati, Wensi Zhu, Claudio BassotClaudio Bassot, John LambJohn Lamb, Petras Kundrotas
<div>All scripts for predictions and analysis are available from https://github.com/ElofssonLab/bioinfo-toolbox/trRosetta/</div><div>Details for each run are available from https://github.com/ElofssonLab/bioinfo-toolbox/benchmark5/benchmark4.3/.</div><div>All models joined alignments, and evaluation results are available from a figshare repository[44].</div><div><br></div><div>The data is organized as follows</div><div><br></div><div>1) One diretora (N*/ as well as ./) contains all the results and data for one set of parameters</div><div>2) In each directory the following subdirectories are included</div><div>2a) seq/ (all sequences)</div><div>2b) pdb/ (all orginal pdb files) </div><div>2c) dimer/ all merged msa files</div><div>2d) pymodel/ all models generated and the measuremenst (in csv files) to evalute their performance.</div><div>3) In the director Figures/ all figures, scripts to generat them as well as summary of all predictions in a csv files is included</div><div><br></div>

Funding

Towards a complete map of the transmembrane proteome in Yeast and E.Coli

Swedish Research Council

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swedish e-science research council (SERC)

SNIC 2020/5-300

History

Publisher

Stockholm University

Contact email

arne@bioinfo.se