Bacterial and human proteomes dataset
The dataset consists of a fasta file including 36 bacterial species and the human proteome obtained from the Uniprot database. The 36 bacterial species were chosen based on ≥ 1 % detection of total reads in 16S sequencing data of dried cervicovaginal fluid from paper cards. This dataset can be used as a reference file for quantification of bacterial proteins using maxquant.
The fasta file contains a representative proteome for the following species:
Proteome_ID | Species |
UP000234775 | Aerococcus christensenii |
UP000016519 | Alloscardovia omnicolens |
UP000005984 | Anaerococcus lactolyticus |
UP000003191 | Bifidobacterium breve |
UP000003503 | Dialister micraerophilus |
UP000005947 | Fannyhessea vaginae |
UP000005392 | Fusobacterium animalis |
UP000002521 | Fusobacterium nucleatum |
UP000258888 | Gardnerella vaginalis |
UP000255264 | Haemophilus pittmaniae |
UP000004115 | Lactobacillus iners |
UP000003242 | Megasphaera lornae |
UP000002631 | Mycoplasma hominis |
UP000004206 | Peptostreptococcus anaerobius |
UP000002786 | Prevotella bivia |
UP000033103 | Sneathia vaginalis |
UP000000423 | Ureaplasma parvum |
UP000029628 | Veillonella montpellierensis |
UP000003744 | Anaerococcus tetradius |
UP000253807 | Haemophilus parainfluenzae |
UP000067598 | Lactobacillus crispatus |
UP000189488 | Lactobacillus gasseri |
UP000327236 | Lactobacillus jensenii |
UP000318911 | Lactobacillus mulieris |
UP000070160 | Megasphaera hutchinsoni |
UP000070531 | Prevotella amnii |
UP000254072 | Prevotella disiens |
UP001254699 | Sneathia sanguinegens |
UP000238573 | Streptococcus anginosus |
UP000008693 | Bifidobacterium dentium |
UP000005388 | Streptococcus urinalis |
UP000189488 | Lactobacillus gasseri |
UP000000821 | Streptococcus agalactiae |
UP000000625 | Escherichia coli |
UP000008816 | Staphylococcus aureus |
UP000000431 | Chlamydia trachomatis |
UP000005640 | Homo sapiens |
