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Allel-specific read counts for sprat population samples used in "Limited parallelism in genetic adaptation to brackish water bodies in European sprat and Atlantic herring"

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posted on 2024-05-23, 13:55 authored by Mats PetterssonMats Pettersson, María QuintelaMaría Quintela, François Besnier, Qiaoling Deng, Florian Berg, Cecilie Kvamme, Dorte BekkevoldDorte Bekkevold, Mai-Britt Mosbech, Ignas Bunikis, Roger Lille-Langøy, Iole Leonori, Andreas WallbergAndreas Wallberg, Kevin A. Glover, Leif Andersson

"Sprat_DeDup_v2_HiC.fasta.gz" contians the draft genome used in the study, in FASTA format. It is the version upon the SNPs (single nucleotide polymorphisms) described have been called.

"Sprat_pool_AD_DeDup_v2_PASS.txt.gz" contains tab-separated allele counts, as output using the "--counts" option in vcftools, from pool re-sequencting of the samples used in the study. Please see the corresponding supplementary information for sample codes etc. These counts underly the frequencies used throughout the study.

Funding

Strategic initiatives at the Institute of Marine Research

The Research Council of Norway

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The genetics of biodiversity

Swedish Research Council

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Knut and Alice Wallenberg Foundation (KAW 2016.0361)

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Publisher

Uppsala university

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    Leif Andersson Lab

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