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5'P metadegradome coverage for vaginal microbiome datasets

dataset
posted on 2023-04-04, 07:35 authored by Susanne Huch, Lilit Nersisyan, Valerie D Valeriano, Juan Du, Jing Wang, Lars Engstrand, Vicent PelechanoVicent Pelechano

Coverage traks for  5´ monophosphorylated mRNA decay intermediates (5´P) in bacterial species from vaginal swabs.

Bedgraph files provide information for the 5'P coverage for the forward and reverse strand. Datasets are provided for 8 samples (r1 to r8).


Funding

Swedish Foundation’s Starting Grant (Ragnar Söderberg Foundation)

Wallenberg Academy Fellowship (KAW 2016.0123)

Impact of transcriptome complexity on gene expression dynamics

Swedish Research Council

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Genomic dissection of cellular plasticity and transcriptional memory in drug tolerance.

Swedish Research Council

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Development of a novel tool for diagnosis and prevention of antimicrobial resistance

Swedish Research Council

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Roles of snoRNAs in chromatin organization, gene expression and DNA repair

Swedish Research Council

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Ribosomal frameshifts as a novel mechanism to control RNA turnover in stress

European Commission

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Karolinska Institutet (SciLifeLab Fellowship, SFO and KI funds)

MoESCS RA Science Committee starting grant [21SCG-1F006]

RED postdoctoral Fellowship [2021, SciLifeLab-KI]

Swedish Research Council [2021-06112] to JD

Ministerio de Ciencia, Innovación y Universidades PGC2018-098073-A-I00 MCIU/AEI/FEDER, UE to J.H.C

National Key R&D Program of China (2017YFC0908405)

Dissecting quantitative traits and their underlying genetic interactions via systematic genome editing

European Research Council

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Joint China-Sweden mobility grant from STINT (CH2018-7750)

Full-length RNA sequencing studies the role of alternative splicing in dilated cardiomyopathy

National Natural Science Foundation of China

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Study of complex transcriptomics in human diseases

National Natural Science Foundation of China

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Harnessing the power of the vaginal microbiome to combat Human Papillomavirus (HPV) infections and related diseases

Swedish Research Council

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History

Publisher

Karolinska Institutet

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