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2. Comparative population transcriptomics in krill: Genetic variation data in nine species of krill (VCF files)

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posted on 2023-10-19, 13:31 authored by Andreas WallbergAndreas Wallberg

This item contains a gzipped archive with nine VCF files, containing quality-filtered and annotated biallelic single-nucleotide polymorphisms (SNPs) detected in nine species of krill.

Archive:

krill_filtered_and_annotated_snps.tar.gz

Contents of archive (FILE,SIZE,SPECIES,SAMPLES,SNPs):

  • earm.vcf,673M,Euphausia similis var. armata,9,1226350
  • elos.vcf,105M,Euphausia longirostris,3,259710
  • esim.vcf,395M,Euphausia similis,10,687439
  • espi.vcf,604M,Euphausia spinifera,17,814566
  • esup.vcf,540M,Euphausia superba,20,651367
  • etri.vcf,857M,Euphausia triacantha,20,1048044
  • eval.vcf,1,7G,Euphausia vallentini,18,2154453
  • mnor.vcf,399M,Meganyctiphanes norvegica,7,798030
  • nmeg.vcf,316M,Nematoscelis megalops,9,570719

The VCF files follow the standard VCFv4.2 format, which is available at this external site:

https://samtools.github.io/hts-specs/VCFv4.2.pdf

Note:

Compared to the VCF files used in analyses, these files have been edited to reflect the species and sample names used in publication figures and tables and long cluster-specific file paths have been removed from commands stored in the VCF headers.

Funding

Local adaptation and genome evolution in crustacean zooplankton: how does size matter?

Swedish Research Council

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History

Publisher

Uppsala University

Access request email

andreas.wallberg@imbim.uu.se

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