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2. Comparative population transcriptomics in krill: Genetic variation data in nine species of krill (VCF files)

dataset
posted on 2023-10-19, 13:31 authored by Andreas WallbergAndreas Wallberg
<p>This item contains a gzipped archive with nine VCF files, containing quality-filtered and annotated biallelic single-nucleotide polymorphisms (SNPs) detected in nine species of krill.</p> <p><strong>Archive:</strong></p> <p>krill_filtered_and_annotated_snps.tar.gz</p> <p><strong>Contents of archive (FILE,SIZE,SPECIES,SAMPLES,SNPs):</strong></p> <ul> <li>earm.vcf,673M,<em>Euphausia similis</em> var. <em>armata</em>,9,1226350</li> <li>elos.vcf,105M,<em>Euphausia longirostris</em>,3,259710</li> <li>esim.vcf,395M,<em>Euphausia similis</em>,10,687439</li> <li>espi.vcf,604M,<em>Euphausia spinifera</em>,17,814566</li> <li>esup.vcf,540M,<em>Euphausia superba</em>,20,651367</li> <li>etri.vcf,857M,<em>Euphausia triacantha</em>,20,1048044</li> <li>eval.vcf,1,7G,<em>Euphausia vallentini,</em>18,2154453</li> <li>mnor.vcf,399M,<em>Meganyctiphanes norvegica</em>,7,798030</li> <li>nmeg.vcf,316M,<em>Nematoscelis megalops</em>,9,570719</li> </ul> <p>The VCF files follow the standard VCFv4.2 format, which is available at this external site:</p> <p><a href="https://samtools.github.io/hts-specs/VCFv4.2.pdf" target="_blank">https://samtools.github.io/hts-specs/VCFv4.2.pdf</a></p> <p><strong>Note:</strong></p> <p>Compared to the VCF files used in analyses, these files have been edited to reflect the species and sample names used in publication figures and tables and long cluster-specific file paths have been removed from commands stored in the VCF headers.</p>

Funding

Local adaptation and genome evolution in crustacean zooplankton: how does size matter?

Swedish Research Council

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Publisher

Uppsala University

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andreas.wallberg@imbim.uu.se

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